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Author Details

Robert Friedman
University of South Carolina
2000
81
34
PMIDPaper TitleJournal TitlePublished Year
37333499Editorial: Evolution in Neurogenomics.Front Genet2023
33395189Test of robustness of pharyngeal neural networks in Caenorhabditis elegans.Neuroreport2021
32485285Measurements of neuronal morphological variation across the rat neocortex.Neurosci Lett2020
33263076Themes of advanced information processing in the primate brain.AIMS Neurosci2020
31695603Neuronal Morphology and Synapse Count in the Nematode Worm.Front Comput Neurosci2019
29123238Reconstructing Yeasts Phylogenies and Ancestors from Whole Genome Data.Sci Rep2017
24586863Functional tradeoffs underpin salinity-driven divergence in microbial community composition.PLoS One2014
25142446Evolutionary diversification of the vertebrate transferrin multi-gene family.Immunogenetics2014
24951781Optimization of multilocus sequence analysis for identification of species in the genus Vibrio.Appl Environ Microbiol2014
23564253Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform.Genome Res2013
24349140A metagenomic framework for the study of airborne microbial communities.PLoS One2013
23754396Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum.Proc Natl Acad Sci U S A2013
22170421Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage.ISME J2012
23010940Codon usage methods for horizontal gene transfer detection generate an abundance of false positive and false negative results.Curr Microbiol2012
22929217Phylogenetic analysis of genome rearrangements among five mammalian orders.Mol Phylogenet Evol2012
22436995Experimental analysis of sources of error in evolutionary studies based on Roche/454 pyrosequencing of viral genomes.Genome Biol Evol2012
21115137Ongoing purifying selection on intergenic spacers in group A streptococcus.Infect Genet Evol2011
22108016Distinctive amino acid composition profiles in salivary proteins of the tick Ixodes scapularis.Ticks Tick Borne Dis2011
21930223Genomic organization of the glutathione S-transferase family in insects.Mol Phylogenet Evol2011
21531921Genome reduction by deletion of paralogs in the marine cyanobacterium Prochlorococcus.Mol Biol Evol2011
21731595PolyAna: analyzing synonymous and nonsynonymous polymorphic sites.Conserv Genet Resour2011
21315771A survey of schistosome protein domain types: insights into unique biological properties.Mol Biochem Parasitol2011
21118608Genome sequences reveal divergence times of malaria parasite lineages.Parasitology2011
19833230The evolutionary biology of poxviruses.Infect Genet Evol2010
21048761Genomic and functional adaptation in surface ocean planktonic prokaryotes.Nature2010
19562076Gene order phylogeny and the evolution of methanogens.PLoS One2009
19601972A phylogenetic approach to gene expression data: evidence for the evolutionary origin of mammalian leukocyte phenotypes.Evol Dev2009
19364529The insect SNMP gene family.Insect Biochem Mol Biol2009
19332110More radical amino acid replacements in primates than in rodents: support for the evolutionary role of effective population size.Gene2009
18026854Alternative splicing, gene duplication and connectivity in the genetic interaction network of the nematode worm Caenorhabditis elegans.Genetica2008
18820253Genome size reduction in the chicken has involved massive loss of ancestral protein-coding genes.Mol Biol Evol2008
19050756Gene order phylogeny of the genus Prochlorococcus.PLoS One2008
18581108Codon-based tests of positive selection, branch lengths, and the evolution of mammalian immune system genes.Immunogenetics2008
18696029The phylogenetic informativeness of nucleotide and amino acid sequences for reconstructing the vertebrate tree.J Mol Evol2008
18670397Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter.ISME J2008
18667439Synonymous and nonsynonymous polymorphisms versus divergences in bacterial genomes.Mol Biol Evol2008
16959502Likelihood-ratio tests for positive selection of human and mouse duplicate genes reveal nonconservative and anomalous properties of widely used methods.Mol Phylogenet Evol2007
17574446The effect of branch lengths on phylogeny: an empirical study using highly conserved orthologs from mammalian genomes.Mol Phylogenet Evol2007
17355176The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific.PLoS Biol2007
17355171The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families.PLoS Biol2007
17005284Variable intensity of purifying selection on cytotoxic T-lymphocyte epitopes in hepatitis C virus.Virus Res2007
16897462Sharing of transcription factors after gene duplication in the yeast Saccharomyces cerevisiae.Genetica2007
16386964Pattern of gene duplication in the Cotesia congregata Bracovirus.Infect Genet Evol2006
16806803Across-tissue expression and evolution of genes controlled by the Aire transcription factor.Genomics2006
16840556A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes.Proc Natl Acad Sci U S A2006
16489222Analysis of core housekeeping and virulence genes reveals cryptic lineages of Clostridium perfringens that are associated with distinct disease presentations.Genetics2006
15496551How strong is the mutagenicity of recombination in mammals?Mol Biol Evol2005
16315107Gene duplication and the properties of biological networks.J Mol Evol2005
15876192Loss of ancestral genes in the genomic evolution of Ciona intestinalis.Evol Dev2005
16012097Gene family content-based phylogeny of prokaryotes: the effect of criteria for inferring homology.Syst Biol2005
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Collaborators

J C Venter
The J. Craig Venter Institute
Co-authored papers 9
Shibu Yooseph
University of Central Florida
Co-authored papers 7
Douglas B Rusch
Center for Genomics and Bioinformatics, Indiana University
Co-authored papers 5
Granger Sutton
J. Craig Venter Institute
Co-authored papers 4
Shannon J Williamson
J. Craig Venter Institute
Co-authored papers 4
Aaron L Halpern
Illumina Inc.
Co-authored papers 4
Marvin Frazier
Co-authored papers 4
Jonathan H Badger
Center for Cancer Research, National Cancer Institute, National Institutes of Health
Co-authored papers 3
Steve Ferriera
Broad Institute of MIT and Harvard
Co-authored papers 3
Roger S Lasken
J. Craig Venter Institute
Co-authored papers 3
Yu-Hui Rogers
Johns Hopkins Bayview Research Campus
Co-authored papers 3
Robert L Strausberg
Ludwig Institute for Cancer Research
Co-authored papers 3
Jonathan A Eisen
McLean Hospital
Co-authored papers 2
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Co-authored papers 2
Michael G Ziegler
University of California San Diego School of Medicine
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Saul Kravitz
Co-authored papers 2
Karen Beeson
J. Craig Venter Institute
Co-authored papers 2
Karla B Heidelberg
The University of Southern California
Co-authored papers 2
Pavel A Pevzner
University of California
Co-authored papers 2
Karin A Remington
The J. Craig Venter Institute.
Co-authored papers 2
Mathangi Thiagarajan
Co-authored papers 2
Johannes B Goll
.The Emmes Corporation
Co-authored papers 2
Cynthia Andrews-Pfannkoch
Mayo Clinic
Co-authored papers 2
Lukasz Jaroszewski
University of California Riverside School of Medicine
Co-authored papers 1
Susan T Mashiyama
University of California san francisco
Co-authored papers 1
Vineet Bafna
University of California San Diego
Co-authored papers 1
Sharon L Reed
university of california san diego Health
Co-authored papers 1
Steven E Brenner
University of California berkeley
Co-authored papers 1
Weizhong Li
J. Craig Venter Institute
Co-authored papers 1
Jeremy D Selengut
Craig Venter Institute, 9704 Medical Center Drive
Co-authored papers 1
Release 1.2