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Author Details

Brian Jim??nez-Garc??a
Utrecht University
2012
34
16
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37363399Editorial: Web tools for modeling and analysis of biomolecular interactions Volume II.Front Mol Biosci2023
37905971Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment.Proteins2023
37877240Rational Prediction of PROTAC-Compatible Protein-Protein Interfaces by Molecular Docking.J Chem Inf Model2023
37140054The LightDock Server: Artificial Intelligence-powered modeling of macromolecular interactions.Nucleic Acids Res2023
37365936Discriminating physiological from non-physiological interfaces in structures of protein complexes: A community-wide study.Proteomics2023
37363399Editorial: Web tools for modeling and analysis of biomolecular interactions Volume II.Front Mol Biosci2023
37905971Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment.Proteins2023
37877240Rational Prediction of PROTAC-Compatible Protein-Protein Interfaces by Molecular Docking.J Chem Inf Model2023
37140054The LightDock Server: Artificial Intelligence-powered modeling of macromolecular interactions.Nucleic Acids Res2023
37365936Discriminating physiological from non-physiological interfaces in structures of protein complexes: A community-wide study.Proteomics2023
36275623pyDockDNA: A new web server for energy-based protein-DNA docking and scoring.Front Mol Biosci2022
36275623pyDockDNA: A new web server for energy-based protein-DNA docking and scoring.Front Mol Biosci2022
35480880Editorial: Web Tools for Modeling and Analysis of Biomolecular Interactions.Front Mol Biosci2022
37792496UDock2: interactive real-time multi-body protein-protein docking software.Bioinformatics2022
37529288Towards design of drugs and delivery systems with the Martini coarse-grained model.QRB Discov2022
37529288Towards design of drugs and delivery systems with the Martini coarse-grained model.QRB Discov2022
37792496UDock2: interactive real-time multi-body protein-protein docking software.Bioinformatics2022
35480880Editorial: Web Tools for Modeling and Analysis of Biomolecular Interactions.Front Mol Biosci2022
33111403PDB-tools web: A user-friendly interface for the manipulation of PDB files.Proteins2021
33111403PDB-tools web: A user-friendly interface for the manipulation of PDB files.Proteins2021
34395534Structural Biology in the Clouds: The WeNMR-EOSC Ecosystem.Front Mol Biosci2021
34395534Structural Biology in the Clouds: The WeNMR-EOSC Ecosystem.Front Mol Biosci2021
31418773LightDock goes information-driven.Bioinformatics2020
31746039Integrative modeling of protein-protein interactions with pyDock for the new docking challenges.Proteins2020
32006283Structural Characterization of Protein-Protein Interactions with pyDockSAXS.Methods Mol Biol2020
31727476Modeling Antibody-Antigen Complexes by Information-Driven Docking.Structure2020
31808797pyDockEneRes: per-residue decomposition of protein-protein docking energy.Bioinformatics2020
32683441proABC-2: PRediction of AntiBody contacts v2 and its application to information-driven docking.Bioinformatics2020
33277503Integrative modeling of membrane-associated protein assemblies.Nat Commun2020
31418773LightDock goes information-driven.Bioinformatics2020
31727476Modeling Antibody-Antigen Complexes by Information-Driven Docking.Structure2020
31808797pyDockEneRes: per-residue decomposition of protein-protein docking energy.Bioinformatics2020
31746039Integrative modeling of protein-protein interactions with pyDock for the new docking challenges.Proteins2020
32006283Structural Characterization of Protein-Protein Interactions with pyDockSAXS.Methods Mol Biol2020
33277503Integrative modeling of membrane-associated protein assemblies.Nat Commun2020
32683441proABC-2: PRediction of AntiBody contacts v2 and its application to information-driven docking.Bioinformatics2020
31141126PRODIGY-crystal: a web-tool for classification of biological interfaces in protein complexes.Bioinformatics2019
31619446How Boundaries Form: Linked Nonautonomous Feedback Loops Regulate Pattern Formation in Yeast Colonies.Genetics2019
31612567Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.Proteins2019
30020414SKEMPI 2.0: an updated benchmark of changes in protein-protein binding energy, kinetics and thermodynamics upon mutation.Bioinformatics2019
31141126PRODIGY-crystal: a web-tool for classification of biological interfaces in protein complexes.Bioinformatics2019
30020414SKEMPI 2.0: an updated benchmark of changes in protein-protein binding energy, kinetics and thermodynamics upon mutation.Bioinformatics2019
31612567Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.Proteins2019
31619446How Boundaries Form: Linked Nonautonomous Feedback Loops Regulate Pattern Formation in Yeast Colonies.Genetics2019
28968719LightDock: a new multi-scale approach to protein-protein docking.Bioinformatics2018
28968719LightDock: a new multi-scale approach to protein-protein docking.Bioinformatics2018
27701776pyDock scoring for the new modeling challenges in docking: Protein-peptide, homo-multimers, and domain-domain interactions.Proteins2017
27701776pyDock scoring for the new modeling challenges in docking: Protein-peptide, homo-multimers, and domain-domain interactions.Proteins2017
28200016IRaPPA: information retrieval based integration of biophysical models for protein assembly selection.Bioinformatics2017
28200016IRaPPA: information retrieval based integration of biophysical models for protein assembly selection.Bioinformatics2017
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Collaborators

Juan Fern??ndez-Recio
Instituto de Ciencias de la Vid y del Vino (ICVV-CSIC)
Co-authored papers 20
Alexandre M J J Bonvin
Bijvoet Center for Biomolecular Research, Utrecht University
Co-authored papers 14
Iain H Moal
GSK Medicines Research Centre
Co-authored papers 10
Miguel Romero-Durana
Pontificia Universidad Javeriana
Co-authored papers 8
Jorge Roel-Touris
Co-authored papers 7
Zhiping Weng
University of Massachusetts Medical School
Co-authored papers 6
Paul A Bates
The Francis Crick Institute
Co-authored papers 6
Thom Vreven
Visterra Inc.
Co-authored papers 6
Xiaoqin Zou
Dalton Cardiovascular Research Center, University of Missouri
Co-authored papers 6
Shoshana J Wodak
VIB-VUB Center for Structural Biology
Co-authored papers 6
Brian G Pierce
University of Maryland Institute for Bioscience and Biotechnology Research
Co-authored papers 5
Dima Kozakov
Stony Brook University
Co-authored papers 5
Sandor Vajda
Boston University
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Didier Barradas-Bautista
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Chiara Pallara
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Panagiotis L Kastritis
Interdisciplinary Research Center HALOmem, Martin Luther University Halle-Wittenberg
Co-authored papers 4
Romina Oliva
University of Naples "Parthenope"
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Laura Pérez-Cano
Co-authored papers 4
Sergei Grudinin
University Grenoble Alpes, CNRS
Co-authored papers 4
Mieczyslaw Torchala
University of Gdansk
Co-authored papers 4
Xianjin Xu
Dalton Cardiovascular Research Center, University of Missouri
Co-authored papers 4
Luigi Cavallo
King Abdullah University of Science and Technology (KAUST)
Co-authored papers 4
Marc F Lensink
University Lille, CNRS
Co-authored papers 4
Genki Terashi
Co-authored papers 4
Chaok Seok
Seoul National University
Co-authored papers 4
Sameer Velankar
European Bioinformatics Institute
Co-authored papers 4
Sheng-You Huang
Huazhong University of Science and Technology
Co-authored papers 4
Daisuke Kihara
Purdue University
Co-authored papers 4
Dmitri Beglov
Boston University
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Petras J Kundrotas
The University of Kansas
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Release 1.2