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Author Details

Brock C Christensen
Geisel School of Medicine, Dartmouth College
2005
180
44
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
38090774Detailed immune profiling in pediatric Crohn's disease using methylation cytometry.Epigenetics2024
37609141An Aurora kinase A-BOD1L1-PP2A B56 Axis promotes chromosome segregation fidelity.bioRxiv2024
36305646DNA methylation biomarkers for noninvasive detection of triple-negative breast cancer using liquid biopsy.Int J Cancer2023
37527159Genome-Scale Methylation Analysis Identifies Immune Profiles and Age Acceleration Associations with Bladder Cancer Outcomes.Cancer Epidemiol Biomarkers Prev2023
38074282Periconceptional and Prenatal Exposure to Metals and Extracellular Vesicle and Particle miRNAs in Human Milk: A Pilot Study.Expo Health2023
37481666Assessment of emerging pretraining strategies in interpretable multimodal deep learning for cancer prognostication.BioData Min2023
37873287The Overlooked Role of Specimen Preparation in Bolstering Deep Learning-Enhanced Spatial Transcriptomics Workflows.medRxiv2023
37873186Feasibility of Inferring Spatial Transcriptomics from Single-Cell Histological Patterns for Studying Colon Cancer Tumor Heterogeneity.medRxiv2023
37425894Normal gastric tissue <i>Helicobacter pylori</i> infection is associated with epigenetic age acceleration, increased mitotic tick rate, tissue cell composition, and Natural Killer cell methylation alterations.bioRxiv2023
37089814<b>HiTAIC: hi</b>erarchical tumor artificial intelligence classifier traces tissue of origin and tumor type in primary and metastasized tumors using DNA methylation.NAR Cancer2023
36958602Distinct HOX Gene Family DNA Methylation Profiles in Histologically Normal Skin Dependent on Dermoscopic Pattern of Adjacent Nevi.J Invest Dermatol2023
37190077Down Syndrome Altered Cell Composition in Blood, Brain, and Buccal Swab Samples Profiled by DNA-Methylation-Based Cell-Type Deconvolution.Cells2023
37118842Assessment of immune cell profiles among post-menopausal women in the Women's Health Initiative using DNA methylation-based methods.Clin Epigenetics2023
37114077Inferring spatial transcriptomics markers from whole slide images to characterize metastasis-related spatial heterogeneity of colorectal tumors: A pilot study.J Pathol Inform2023
37377320Large-scale validation study of an improved semiautonomous urine cytology assessment tool: AutoParis-X.Cancer Cytopathol2023
37404460Hierarchical deconvolution for extensive cell type resolution in the human brain using DNA methylation.Front Neurosci2023
37337720Calculating detection limits and uncertainty of reference-based deconvolution of whole-blood DNA methylation data.Epigenomics2023
37138613Human milk-associated bacterial communities associate with the infant gut microbiome over the first year of life.Front Microbiol2023
37037284Identification of Spatial Proteomic Signatures of Colon Tumor Metastasis: A Digital Spatial Profiling Approach.Am J Pathol2023
37232845The Effect of Lung Resection for NSCLC on Circulating Immune Cells: A Pilot Study.Curr Oncol2023
37333096Alteration of DNMT1/DNMT3A by eribulin elicits global DNA methylation changes with potential therapeutic implications for triple-negative breast cancer.bioRxiv2023
37358142Examining longitudinal markers of bladder cancer recurrence through a semiautonomous machine learning system for quantifying specimen atypia from urine cytology.Cancer Cytopathol2023
36859337Lineage plasticity enables low-ER luminal tumors to evolve and gain basal-like traits.Breast Cancer Res2023
36401758Video-Based Deep Learning to Detect Dyssynergic Defecation with 3D High-Definition Anorectal Manometry.Dig Dis Sci2023
36780234Application of Novel Breast Biospecimen Cell-Type Adjustment Identifies Shared DNA Methylation Alterations in Breast Tissue and Milk with Breast Cancer-Risk Factors.Cancer Epidemiol Biomarkers Prev2023
36909536Hydroxymethylation alterations in progenitor-like cell types of pediatric central nervous system tumors are associated with cell type-specific transcriptional changes.Res Sq2023
36574487Concentrations of Per- and Polyfluoroalkyl Substances in Paired Maternal Plasma and Human Milk in the New Hampshire Birth Cohort.Environ Sci Technol2023
36865335Tumor type and cell type-specific gene expression alterations in diverse pediatric central nervous system tumors identified using single nuclei RNA-seq.Res Sq2023
34597382Interactions of Age and Blood Immune Factors and Noninvasive Prediction of Glioma Survival.J Natl Cancer Inst2022
35382559Distinct cytosine modification profiles define epithelial-to-mesenchymal cell-state transitions.Epigenomics2022
35761387Widespread redundancy in -omics profiles of cancer mutation states.Genome Biol2022
35392283Phase I Study of High-Dose L-methylfolate in Combination with Temozolomide and Bevacizumab in Recurrent IDH wild-type High-Grade Glioma.Cancer Res Commun2022
36777525Early-life exposure to per- and polyfluoroalkyl substances and infant gut microbial composition.Environ Epidemiol2022
36522672Comparative analysis of the DNA methylation landscape in CD4, CD8, and B memory lineages.Clin Epigenetics2022
36307860Evaluation of cross-platform compatibility of a DNA methylation-based glucocorticoid response biomarker.Clin Epigenetics2022
36127421DNA methylation as a pharmacodynamic marker of glucocorticoid response and glioma survival.Nat Commun2022
35921406Phenotypic heterogeneity driven by plasticity of the intermediate EMT state governs disease progression and metastasis in breast cancer.Sci Adv2022
36348337HiTIMED: hierarchical tumor immune microenvironment epigenetic deconvolution for accurate cell type resolution in the tumor microenvironment using tumor-type-specific DNA methylation data.J Transl Med2022
33783321Identification of a foetal epigenetic compartment in adult human kidney.Epigenetics2022
35189960A core of differentially methylated CpG loci in gMDSCs isolated from neonatal and adult sources.Clin Epigenetics2022
34890147Mixed Effects Machine Learning Models for Colon Cancer Metastasis Prediction using Spatially Localized Immuno-Oncology Markers.Pac Symp Biocomput2022
35127232Comparison of Machine-Learning Algorithms for the Prediction of Current Procedural Terminology (CPT) Codes from Pathology Reports.J Pathol Inform2022
35244678Racial Differences in the Tumor Immune Landscape and Survival of Women with High-Grade Serous Ovarian Carcinoma.Cancer Epidemiol Biomarkers Prev2022
35063012Immune profiles and DNA methylation alterations related with non-muscle-invasive bladder cancer outcomes.Clin Epigenetics2022
35029129Navigating the hydroxymethylome: experimental biases and quality control tools for the tandem bisulfite and oxidative bisulfite Illumina microarrays.Epigenomics2022
35140201Enhanced cell deconvolution of peripheral blood using DNA methylation for high-resolution immune profiling.Nat Commun2022
34871578Genome-Scale DNA Methylation Analysis Identifies Repeat Element Alterations that Modulate the Genomic Stability of Melanocytic Nevi.J Invest Dermatol2022
35048488DNA methylation-derived systemic inflammation indices and their association with oropharyngeal cancer risk and survival.Head Neck2022
35259245Human cytomegalovirus alters immune cell profile with potential implications for patient survival in head and neck cancer.Carcinogenesis2022
33126827Hypermethylation and global remodelling of DNA methylation is associated with acquired cisplatin resistance in testicular germ cell tumours.Epigenetics2021
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Collaborators

Karl T Kelsey
Brown School of Public Health
Co-authored papers 80
Lucas A Salas
Geisel School of Medicine, Dartmouth College
Co-authored papers 48
Margaret R Karagas
Co-authored papers 44
Annette M Molinaro
Co-authored papers 13
Raphael Bueno
Co-authored papers 10
Gregory J Tsongalis
Dartmouth Health and the Dartmouth Cancer Center, USA Geisel School of Medicine
Co-authored papers 6
Juliette C Madan
Co-authored papers 5
Ru-Fang Yeh
Genentech Inc.
Co-authored papers 5
Shohreh F Farzan
Co-authored papers 4
Arief A Suriawinata
Dartmouth Hitchcock Medical Center
Co-authored papers 3
Chao Cheng
Baylor College of Medicine
Co-authored papers 3
Jennifer A Doherty
Huntsman Cancer Institute, University of Utah
Co-authored papers 2
Jiang Gui
Geisel School of Medicine at Dartmouth
Co-authored papers 2
Camilo E Fadul
University of Virginia Health System
Co-authored papers 2
Mitchel S Berger
University of California san francisco
Co-authored papers 2
Jeffrey A Thompson
University of Kansas Medical Center
Co-authored papers 2
Fang Fang
Co-authored papers 2
Michael S Kobor
University of British Columbia
Co-authored papers 2
Vessela N Kristensen
Faculty of Clinical Medicine, University of Oslo
Co-authored papers 2
Carly A Bobak
Dartmouth College
Co-authored papers 2
Vadim N Gladyshev
Brigham and Women's Hospital
Co-authored papers 1
Joanna J Phillips
University of California san francisco
Co-authored papers 1
Olga V Danilova
City of Hope National Medical Center
Co-authored papers 1
Sean M McBride
Memorial Sloan Kettering Cancer Center
Co-authored papers 1
Vardhman K Rakyan
The Blizard Institute, Queen Mary University of London
Co-authored papers 1
Devin Absher
Kaiser Permanente Research Bank
Co-authored papers 1
Andrew E Teschendorff
UCL Cancer Institute, University College London
Co-authored papers 1
Riccardo E Marioni
Institute of Genetics and Cancer, University of Edinburgh
Co-authored papers 1
Peter D Adams
Sanford Burnham Prebys Medical Discovery Institute
Co-authored papers 1
Wolfgang Wagner
Center for Integrated Oncology Aachen Bonn Cologne Dusseldorf (CIO ABCD)
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