Author details

Full Name

Hong Cui

Affiliation

University of Arizona

ORCID

Career Start Year

2010

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
35106535	Authors' attitude toward adopting a new workflow to improve the computability of phenotype publications.	Database (Oxford)	2022
35106535	Authors' attitude toward adopting a new workflow to improve the computability of phenotype publications.	Database (Oxford)	2022
34156445	Which methods are the most effective in enabling novice users to participate in ontology creation? A usability study.	Database (Oxford)	2021
34156445	Which methods are the most effective in enabling novice users to participate in ontology creation? A usability study.	Database (Oxford)	2021
33216896	Measurement Recorder: developing a useful tool for making species descriptions that produces computable phenotypes.	Database (Oxford)	2020
33216896	Measurement Recorder: developing a useful tool for making species descriptions that produces computable phenotypes.	Database (Oxford)	2020
29732265	Extraction of phenotypic traits from taxonomic descriptions for the tree of life using natural language processing.	Appl Plant Sci	2018
30393454	Resolving "orphaned" non-specific structures using machine learning and natural language processing methods.	Biodivers Data J	2018
30576485	Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems.	Database (Oxford)	2018
30532623	Modifier Ontologies for frequency, certainty, degree, and coverage phenotype modifier.	Biodivers Data J	2018
30473620	Incentivising use of structured language in biological descriptions: Author-driven phenotype data and ontology production.	Biodivers Data J	2018
29732265	Extraction of phenotypic traits from taxonomic descriptions for the tree of life using natural language processing.	Appl Plant Sci	2018
30576485	Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems.	Database (Oxford)	2018
30393454	Resolving "orphaned" non-specific structures using machine learning and natural language processing methods.	Biodivers Data J	2018
30473620	Incentivising use of structured language in biological descriptions: Author-driven phenotype data and ontology production.	Biodivers Data J	2018
30532623	Modifier Ontologies for frequency, certainty, degree, and coverage phenotype modifier.	Biodivers Data J	2018
27076900	MicrO: an ontology of phenotypic and metabolic characters, assays, and culture media found in prokaryotic taxonomic descriptions.	J Biomed Semantics	2016
27076900	MicrO: an ontology of phenotypic and metabolic characters, assays, and culture media found in prokaryotic taxonomic descriptions.	J Biomed Semantics	2016
27955641	Microbial phenomics information extractor (MicroPIE): a natural language processing tool for the automated acquisition of prokaryotic phenotypic characters from text sources.	BMC Bioinformatics	2016
27855645	Introducing Explorer of Taxon Concepts with a case study on spider measurement matrix building.	BMC Bioinformatics	2016
27955641	Microbial phenomics information extractor (MicroPIE): a natural language processing tool for the automated acquisition of prokaryotic phenotypic characters from text sources.	BMC Bioinformatics	2016
27855645	Introducing Explorer of Taxon Concepts with a case study on spider measurement matrix building.	BMC Bioinformatics	2016
25562316	Finding our way through phenotypes.	PLoS Biol	2015
25887779	OTO: Ontology Term Organizer.	BMC Bioinformatics	2015
25562316	Finding our way through phenotypes.	PLoS Biol	2015
25887779	OTO: Ontology Term Organizer.	BMC Bioinformatics	2015
25140222	Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology.	J Biomed Semantics	2014
25140222	Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology.	J Biomed Semantics	2014
23327936	An overview of the BioCreative 2012 Workshop Track III: interactive text mining task.	Database (Oxford)	2013
23827969	Next-generation phenomics for the Tree of Life.	PLoS Curr	2013
23327936	An overview of the BioCreative 2012 Workshop Track III: interactive text mining task.	Database (Oxford)	2013
23827969	Next-generation phenomics for the Tree of Life.	PLoS Curr	2013
22685456	Applications of natural language processing in biodiversity science.	Adv Bioinformatics	2012
22685456	Applications of natural language processing in biodiversity science.	Adv Bioinformatics	2012
20500882	Semantic annotation of morphological descriptions: an overall strategy.	BMC Bioinformatics	2010
20500882	Semantic annotation of morphological descriptions: an overall strategy.	BMC Bioinformatics	2010

1 - 36 of 36

Claus Weiland

Senckenberg-Leibniz Institution for Biodiversity and Earth System Research

Career Start Year 2014

Number of shared co-authors 6

Benjamin M Gyori

Khoury College of Computer Sciences, Northeastern University

Career Start Year 2014

Number of shared co-authors 14

Nicky Nicolson

Brunel University London

Career Start Year 2014

Number of shared co-authors 1

Tudor Groza

Perth Children's Hospital

Career Start Year 2012

Number of shared co-authors 17

John Deck

University of California berkeley

Career Start Year 2012

Number of shared co-authors 9

Marie-Ang??lique Laporte

Career Start Year 2011

Number of shared co-authors 9

Nicole Vasilevsky

Critical Path Institute

Career Start Year 2011

Number of shared co-authors 31

Simon Jupp

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 2009

Number of shared co-authors 14

James Malone

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 2009

Number of shared co-authors 13

Monica C Munoz-Torres

University of Colorado Anschutz Medical Campus

Career Start Year 2007

Number of shared co-authors 16

Christopher J O Baker

University of New Brunswick

Career Start Year 2007

Number of shared co-authors 1

Evangelos Pafilis

Institute of Marine Biology

Career Start Year 2007

Number of shared co-authors 18

Robert Hoehndorf

King Abdullah University of Science and Technology

Career Start Year 2006

Number of shared co-authors 14

Karin Verspoor

National Centre for Infections in Cancer, 5Peter MacCallum Cancer Centre

Career Start Year 2005

Number of shared co-authors 12

Leyla Garcia

European Bioinformatics Institute

Career Start Year 2005

Number of shared co-authors 5

Rutger A Vos

Naturalis Biodiversity Center

Career Start Year 2003

Number of shared co-authors 24

Dietrich Rebholz-Schuhmann

University of Cologne

Career Start Year 2003

Number of shared co-authors 8

Indra Neil Sarkar

Center for Biomedical Informatics, Brown University

Career Start Year 2001

Number of shared co-authors 0

Norman Morrison

European Bioinformatics Institute

Career Start Year 2001

Number of shared co-authors 17

Michael Bada

Center for Health AI, University of Colorado Anschutz Medical Campus

Career Start Year 2000

Number of shared co-authors 7

Andra Waagmeester

Maastricht University

Career Start Year 1998

Number of shared co-authors 1

Robert Stevens

The University of Manchester

Career Start Year 1998

Number of shared co-authors 6

Yasunori Yamamoto

Database Center for Life Science, Joint Support-Center for Data Science Research

Career Start Year 1997

Number of shared co-authors 11

Lawrence E Hunter

University of Colorado School of Medicine

Career Start Year 1993

Number of shared co-authors 6

Mark D Wilkinson

Universidad Politecnica de Madrid (UPM)

Career Start Year 1993

Number of shared co-authors 6

Phillip Lord

Newcastle University

Career Start Year 1991

Number of shared co-authors 10

Nomi L Harris

Lawrence Berkely National Laboratory, Massachusetts Institute of Technology, Princeton University

Career Start Year 1990

Number of shared co-authors 26

Roderic D M Page

University of Glasgow, United Kingdom University of Glasgow Glasgow United Kingdom.

Career Start Year 1989

Number of shared co-authors 3

Quentin Groom

Stellenbosch University, Stellenbosch University Stellenbosch South Africa.

Career Start Year 1987

Number of shared co-authors 4

Lynette Hirschman

The MITRE Corporation

Career Start Year 1981

Number of shared co-authors 23

row(s) 1 - 30 of 30

James A Macklin

Agriculture and Agri-Food Canada

Co-authored papers 7

Ramona L Walls

Critical Path Institute

Co-authored papers 5

Paula M Mabee

University of South Dakota

Co-authored papers 4

Wasila M Dahdul

University of California irvine

Co-authored papers 4

Melissa A Haendel

American Medical Informatics Association, Oregon Health and Science University, Oregon State University, University of Colorado Anschutz Medical Campus, University of North Carolina at Chapel Hill, University of Wisconsin-Madison

Co-authored papers 3

Steven S Chong

University of Arizona

Co-authored papers 3

Lorena Endara

Department of Biology University of Florida Gainesville Florida USA.

Co-authored papers 3

John Gordon Burleigh

University of Florida

Co-authored papers 3

Melissa A Haendel

Co-authored papers 3

James P Balhoff

Renaissance Computing Institute, University of North Carolina

Co-authored papers 3

Anne E Thessen

Biodiversity Information Standards, Coastal and Estuarine Research Federation, Oregon State University, Phycological Society of America, Society of Professional Consultants, The Data Detektiv, University of Colorado Anschutz Medical Campus, University of Maryland College Park, Women in the Enterprise of Science and Technology

Co-authored papers 3

Robert W Thacker

Stony Brook University

Co-authored papers 2

David Osumi-Sutherland

European Bioinformatics Institute

Co-authored papers 2

Christopher J Mungall

International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences

Co-authored papers 2

Georgios V Gkoutos

Institute of Cancer and Genomic Sciences, University of Birmingham

Co-authored papers 2

Thomas A Dececchi

Mount Marty University

Co-authored papers 2

Heather A Cole

Agriculture and Agri-Food Canada

Co-authored papers 2

Hilmar Lapp

Duke University