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Author Details

Kentaro Tomii
National Institute of Advanced Industrial Science and Technology (AIST)
1996
76
27
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36604501A multipoint guidance mechanism for β-barrel folding on the SAM complex.Nat Struct Mol Biol2023
38016694PoSSuM v.3: A Major Expansion of the PoSSuM Database for Finding Similar Binding Sites of Proteins.J Chem Inf Model2023
37740029Predicting global distributions of eukaryotic plankton communities from satellite data.ISME Commun2023
36697808Author Correction: A multipoint guidance mechanism for β-barrel folding on the SAM complex.Nat Struct Mol Biol2023
36604501A multipoint guidance mechanism for β-barrel folding on the SAM complex.Nat Struct Mol Biol2023
38016694PoSSuM v.3: A Major Expansion of the PoSSuM Database for Finding Similar Binding Sites of Proteins.J Chem Inf Model2023
37740029Predicting global distributions of eukaryotic plankton communities from satellite data.ISME Commun2023
36697808Author Correction: A multipoint guidance mechanism for β-barrel folding on the SAM complex.Nat Struct Mol Biol2023
34964897Crystal structure of Tam41 cytidine diphosphate diacylglycerol synthase from a Firmicutes bacterium.J Biochem2022
35545084Distinct immune cell dynamics correlate with the immunogenicity and reactogenicity of SARS-CoV-2 mRNA vaccine.Cell Rep Med2022
36570321Protein-protein interaction prediction methods: from docking-based to AI-based approaches.Biophys Rev2022
35216093Application of Homology Modeling by Enhanced Profile-Profile Alignment and Flexible-Fitting Simulation to Cryo-EM Based Structure Determination.Int J Mol Sci2022
34964897Crystal structure of Tam41 cytidine diphosphate diacylglycerol synthase from a Firmicutes bacterium.J Biochem2022
35545084Distinct immune cell dynamics correlate with the immunogenicity and reactogenicity of SARS-CoV-2 mRNA vaccine.Cell Rep Med2022
36570321Protein-protein interaction prediction methods: from docking-based to AI-based approaches.Biophys Rev2022
35216093Application of Homology Modeling by Enhanced Profile-Profile Alignment and Flexible-Fitting Simulation to Cryo-EM Based Structure Determination.Int J Mol Sci2022
32975360Rab7D small GTPase is involved in phago-, trogocytosis and cytoskeletal reorganization in the enteric protozoan Entamoeba histolytica.Cell Microbiol2021
32975360Rab7D small GTPase is involved in phago-, trogocytosis and cytoskeletal reorganization in the enteric protozoan Entamoeba histolytica.Cell Microbiol2021
33408415Mitochondrial sorting and assembly machinery operates by β-barrel switching.Nature2021
34938773PreBINDS: An Interactive Web Tool to Create Appropriate Datasets for Predicting Compound-Protein Interactions.Front Mol Biosci2021
34635772HMGB1 signaling phosphorylates Ku70 and impairs DNA damage repair in Alzheimer's disease pathology.Commun Biol2021
34938773PreBINDS: An Interactive Web Tool to Create Appropriate Datasets for Predicting Compound-Protein Interactions.Front Mol Biosci2021
34635772HMGB1 signaling phosphorylates Ku70 and impairs DNA damage repair in Alzheimer's disease pathology.Commun Biol2021
33408415Mitochondrial sorting and assembly machinery operates by β-barrel switching.Nature2021
32166610Neural networks for protein structure and function prediction and dynamic analysis.Biophys Rev2020
32266936Comprehensive analysis of PPARγ agonist activities of stereo-, regio-, and enantio-isomers of hydroxyoctadecadienoic acids.Biosci Rep2020
32166610Neural networks for protein structure and function prediction and dynamic analysis.Biophys Rev2020
31918654DeepECA: an end-to-end learning framework for protein contact prediction from a multiple sequence alignment.BMC Bioinformatics2020
32806678Import of <i>Entamoeba histolytica</i> Mitosomal ATP Sulfurylase Relies on Internal Targeting Sequences.Microorganisms2020
32621216Structural Modeling and Ligand-Binding Prediction for Analysis of Structure-Unknown and Function-Unknown Proteins Using FORTE Alignment and PoSSuM Pocket Search.Methods Mol Biol2020
31918654DeepECA: an end-to-end learning framework for protein contact prediction from a multiple sequence alignment.BMC Bioinformatics2020
32806678Import of <i>Entamoeba histolytica</i> Mitosomal ATP Sulfurylase Relies on Internal Targeting Sequences.Microorganisms2020
32621216Structural Modeling and Ligand-Binding Prediction for Analysis of Structure-Unknown and Function-Unknown Proteins Using FORTE Alignment and PoSSuM Pocket Search.Methods Mol Biol2020
32266936Comprehensive analysis of PPARγ agonist activities of stereo-, regio-, and enantio-isomers of hydroxyoctadecadienoic acids.Biosci Rep2020
31045303Novel lineage-specific transmembrane β-barrel proteins in the endoplasmic reticulum of Entamoeba histolytica.FEBS J2019
31684194Genome-Wide Analysis of Known and Potential Tetraspanins in <i>Entamoeba histolytica</i>.Genes (Basel)2019
31776724Crim1<sup>C140S</sup> mutant mice reveal the importance of cysteine 140 in the internal region 1 of CRIM1 for its physiological functions.Mamm Genome2019
29982330Compound-protein interaction prediction with end-to-end learning of neural networks for graphs and sequences.Bioinformatics2019
31471543Accurate Classification of Biological and non-Biological Interfaces in Protein Crystal Structures using Subtle Covariation Signals.Sci Rep2019
31045303Novel lineage-specific transmembrane β-barrel proteins in the endoplasmic reticulum of Entamoeba histolytica.FEBS J2019
31776724Crim1<sup>C140S</sup> mutant mice reveal the importance of cysteine 140 in the internal region 1 of CRIM1 for its physiological functions.Mamm Genome2019
31684194Genome-Wide Analysis of Known and Potential Tetraspanins in <i>Entamoeba histolytica</i>.Genes (Basel)2019
29982330Compound-protein interaction prediction with end-to-end learning of neural networks for graphs and sequences.Bioinformatics2019
31471543Accurate Classification of Biological and non-Biological Interfaces in Protein Crystal Structures using Subtle Covariation Signals.Sci Rep2019
29178285Template-based quaternary structure prediction of proteins using enhanced profile-profile alignments.Proteins2018
29851996Erratum: AIG1 affects in vitro and in vivo virulence in clinical isolates of Entamoeba histolytica.PLoS Pathog2018
29178285Template-based quaternary structure prediction of proteins using enhanced profile-profile alignments.Proteins2018
29523814Identification of new abscisic acid receptor agonists using a wheat cell-free based drug screening system.Sci Rep2018
29554130AIG1 affects in vitro and in vivo virulence in clinical isolates of Entamoeba histolytica.PLoS Pathog2018
29506019Parallelization of MAFFT for large-scale multiple sequence alignments.Bioinformatics2018
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Collaborators

Kenichiro Imai
Cellular and Molecular Biotechnology Research Institute
Co-authored papers 20
Kazunori D Yamada
Tohoku University
Co-authored papers 9
Tsukasa Nakamura
Purdue University
Co-authored papers 5
Toshiyuki Oda
Graduate School of Medicine, University of Yamanashi
Co-authored papers 4
Minoru Kanehisa
Co-authored papers 3
Yuko Tsuchiya
Co-authored papers 3
Yutaka Akiyama
Co-authored papers 3
Martin C Frith
Artificial Intelligence Research Center, University of Tokyo
Co-authored papers 2
Junko Tsuji
Co-authored papers 2
Zhiping Weng
University of Massachusetts Medical School
Co-authored papers 1
Keehyoung Joo
Center for Advanced Computation, Korea Institute for Advanced Study
Co-authored papers 1
Ivan Anishchenko
University of Washington
Co-authored papers 1
Petras J Kundrotas
The University of Kansas
Co-authored papers 1
Eiichiro Ichiishi
International University of Health and Welfare (IUHV Hospital)
Co-authored papers 1
Anisah W Ghoorah
University of Mauritius
Co-authored papers 1
Neil J Bruce
Heidelberg Institute for Theoretical Studies (HITS)
Co-authored papers 1
Zhiwei Ma
Dalton Cardiovascular Research Center, University of Missouri
Co-authored papers 1
Dmitri Beglov
Boston University
Co-authored papers 1
Liming Qiu
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 1
Artem B Mamonov
MGH/Harvard Medical School
Co-authored papers 1
Yoichi Gondo
Tokai University School of Medicine
Co-authored papers 1
Brian Jim??nez-Garc??a
Utrecht University
Co-authored papers 1
Iain H Moal
GSK Medicines Research Centre
Co-authored papers 1
Rebecca C Wade
Center for Molecular Biology (ZMBH), Heidelberg University
Co-authored papers 1
Jooyoung Lee
Korea Institute for Advanced Study
Co-authored papers 1
Shigeyuki Yokoyama
Shinshu University School of Medicine
Co-authored papers 1
Bernard Maigret
Universite de Lorraine, CNRS
Co-authored papers 1
Gydo C P van Zundert
Utrecht University
Co-authored papers 1
Li C Xue
Utrecht University
Co-authored papers 1
Xiaoqin Zou
Dalton Cardiovascular Research Center, University of Missouri
Co-authored papers 1
Release 1.2