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Author Details

Mark S Baker
Macquarie University
1984
146
42
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
33426872Role of Multiomics Data to Understand Host-Pathogen Interactions in COVID-19 Pathogenesis.J Proteome Res2021
32047889Mass spectrometry-based protein identification in proteomics-a review.Brief Bioinform2021
33752330Use of a Recombinant Biomarker Protein DDA Library Increases DIA Coverage of Low Abundance Plasma Proteins.J Proteome Res2021
33426872Role of Multiomics Data to Understand Host-Pathogen Interactions in COVID-19 Pathogenesis.J Proteome Res2021
33752330Use of a Recombinant Biomarker Protein DDA Library Increases DIA Coverage of Low Abundance Plasma Proteins.J Proteome Res2021
32047889Mass spectrometry-based protein identification in proteomics-a review.Brief Bioinform2021
32931287Research on the Human Proteome Reaches a Major Milestone: >90% of Predicted Human Proteins Now Credibly Detected, According to the HUPO Human Proteome Project.J Proteome Res2020
32931287Research on the Human Proteome Reaches a Major Milestone: >90% of Predicted Human Proteins Now Credibly Detected, According to the HUPO Human Proteome Project.J Proteome Res2020
33067450A high-stringency blueprint of the human proteome.Nat Commun2020
33067450A high-stringency blueprint of the human proteome.Nat Commun2020
31046287In Silico Peptide Repertoire of Human Olfactory Receptor Proteomes on High-Stringency Mass Spectrometry.J Proteome Res2019
31599596Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0.J Proteome Res2019
31573204Mass Spectrometry-Based Plasma Proteomics: Considerations from Sample Collection to Achieving Translational Data.J Proteome Res2019
30223687Proteomics and the microbiome: pitfalls and potential.Expert Rev Proteomics2019
30052774iSwathX: an interactive web-based application for extension of DIA peptide reference libraries.Bioinformatics2019
31176645Oncoproteomics: Current status and future opportunities.Clin Chim Acta2019
31467500Potential early clinical stage colorectal cancer diagnosis using a proteomics blood test panel.Clin Proteomics2019
31430157Progress on Identifying and Characterizing the Human Proteome: 2019 Metrics from the HUPO Human Proteome Project.J Proteome Res2019
31402590Proteomics Reveals Cell-Surface Urokinase Plasminogen Activator Receptor Expression Impacts Most Hallmarks of Cancer.Proteomics2019
31046287In Silico Peptide Repertoire of Human Olfactory Receptor Proteomes on High-Stringency Mass Spectrometry.J Proteome Res2019
30052774iSwathX: an interactive web-based application for extension of DIA peptide reference libraries.Bioinformatics2019
30223687Proteomics and the microbiome: pitfalls and potential.Expert Rev Proteomics2019
31467500Potential early clinical stage colorectal cancer diagnosis using a proteomics blood test panel.Clin Proteomics2019
31176645Oncoproteomics: Current status and future opportunities.Clin Chim Acta2019
31430157Progress on Identifying and Characterizing the Human Proteome: 2019 Metrics from the HUPO Human Proteome Project.J Proteome Res2019
31402590Proteomics Reveals Cell-Surface Urokinase Plasminogen Activator Receptor Expression Impacts Most Hallmarks of Cancer.Proteomics2019
31573204Mass Spectrometry-Based Plasma Proteomics: Considerations from Sample Collection to Achieving Translational Data.J Proteome Res2019
31599596Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0.J Proteome Res2019
29310484Pathology, proteomics and the pathway to personalised medicine.Expert Rev Proteomics2018
30251724Tissue and plasma proteomics for early stage cancer detection.Mol Omics2018
30099871Progress on Identifying and Characterizing the Human Proteome: 2018 Metrics from the HUPO Human Proteome Project.J Proteome Res2018
29957869A Transferrin Triggered Pathway for Highly Targeted Delivery of Graphene-Based Nanodrugs to Treat Choroidal Melanoma.Adv Healthc Mater2018
30138679Systems-based approaches enable identification of gene targets which improve the flavour profile of low-ethanol wine yeast strains.Metab Eng2018
29310484Pathology, proteomics and the pathway to personalised medicine.Expert Rev Proteomics2018
29443976How many human proteoforms are there?Nat Chem Biol2018
30099871Progress on Identifying and Characterizing the Human Proteome: 2018 Metrics from the HUPO Human Proteome Project.J Proteome Res2018
29957869A Transferrin Triggered Pathway for Highly Targeted Delivery of Graphene-Based Nanodrugs to Treat Choroidal Melanoma.Adv Healthc Mater2018
30251724Tissue and plasma proteomics for early stage cancer detection.Mol Omics2018
30138679Systems-based approaches enable identification of gene targets which improve the flavour profile of low-ethanol wine yeast strains.Metab Eng2018
29443976How many human proteoforms are there?Nat Chem Biol2018
27975288De Novo Peptide Sequencing: Deep Mining of High-Resolution Mass Spectrometry Data.Methods Mol Biol2017
28895742Human Prestin: A Candidate PE1 Protein Lacking Stringent Mass Spectrometric Evidence?J Proteome Res2017
28938075The Human Plasma Proteome Draft of 2017: Building on the Human Plasma PeptideAtlas from Mass Spectrometry and Complementary Assays.J Proteome Res2017
28483968Preanalytical Stability of Antibodies to Pathogenic Antigens.Cancer Epidemiol Biomarkers Prev2017
28137566Mass Spectrometry-Based Analysis for the Discovery and Validation of Potential Colorectal Cancer Stool Biomarkers.Methods Enzymol2017
27975291A Systematic Bioinformatics Approach to Identify High Quality Mass Spectrometry Data and Functionally Annotate Proteins and Proteomes.Methods Mol Biol2017
27975288De Novo Peptide Sequencing: Deep Mining of High-Resolution Mass Spectrometry Data.Methods Mol Biol2017
28117396Accelerating the search for the missing proteins in the human proteome.Nat Commun2017
28137566Mass Spectrometry-Based Analysis for the Discovery and Validation of Potential Colorectal Cancer Stool Biomarkers.Methods Enzymol2017
28483968Preanalytical Stability of Antibodies to Pathogenic Antigens.Cancer Epidemiol Biomarkers Prev2017
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Collaborators

Edouard C Nice
Monash University
Co-authored papers 19
William S Hancock
Northeastern University
Co-authored papers 17
Gilbert S Omenn
and School of Public Health, University of Michigan ann arbor
Co-authored papers 16
Seong Beom Ahn
Macquarie Medical School, Macquarie University
Co-authored papers 15
Shoba Ranganathan
Macquarie University
Co-authored papers 14
Eric W Deutsch
Institute for Systems Biology
Co-authored papers 14
Young-Ki Paik
College of Life Sciences and Biotechnology, Yonsei University
Co-authored papers 12
Robert L Moritz
Institute for Systems Biology
Co-authored papers 9
Henry Rodriguez
Office of Cancer Clinical Proteomics Research, National Cancer Institute
Co-authored papers 9
Ruedi Aebersold
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 8
Susan Fanayan
Macquarie University
Co-authored papers 8
Lydie Lane
SIB Swiss Institute of Bioinformatics and University of Geneva
Co-authored papers 8
Nicolle H Packer
Co-authored papers 8
Christopher M Overall
University of British Columbia
Co-authored papers 7
Jennifer E Van Eyk
Smidt Heart Institute, Cedars-Sinai Medical Center
Co-authored papers 7
Fernando J Corrales
National Center for Biotechnology
Co-authored papers 6
Richard J Simpson
Co-authored papers 6
Henning Hermjakob
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 6
Gy??rgy Marko-Varga
Clinical Protein Science & Imaging, Biomedical Centre, Lund University
Co-authored papers 6
Christoph H Borchers
McGill University
Co-authored papers 5
Michael Snyder
Stanford University
Co-authored papers 5
Peipei Ping
University of California at Los Angeles
Co-authored papers 5
Daniel W Chan
Division of Clinical Chemistry, Johns Hopkins University
Co-authored papers 5
Jochen M Schwenk
KTH Royal Institute of Technology
Co-authored papers 5
Subash Adhikari
Institute of Tibetan Plateau Research, Chinese Academy of Sciences
Co-authored papers 5
Richard D Smith
Pacific Northwest National Laboratory
Co-authored papers 4
Stephen E Stein
Co-authored papers 4
Leon R McQuade
Macquarie University
Co-authored papers 4
Mi-Youn Brusniak
Co-authored papers 4
Rune Linding
Humboldt-Universitat zu Berlin
Co-authored papers 4
Release 1.2