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Author Details

Matthew W Fields
Center for Biofilm Engineering (CBE), Montana State University
1997
101
37
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36748549A global perspective on bacterial diversity in the terrestrial deep subsurface.Microbiology (Reading)2023
36970672Algal amendment enhances biogenic methane production from coals of different thermal maturity.Front Microbiol2023
34650231Sulfur cycling and host-virus interactions in Aquificales-dominated biofilms from Yellowstone's hottest ecosystems.ISME J2022
35177633Subsurface hydrocarbon degradation strategies in low- and high-sulfate coal seam communities identified with activity-based metagenomics.NPJ Biofilms Microbiomes2022
35142487In Situ Enhancement and Isotopic Labeling of Biogenic Coalbed Methane.Environ Sci Technol2022
35107332Genomic Features and Pervasive Negative Selection in <i>Rhodanobacter</i> Strains Isolated from Nitrate and Heavy Metal Contaminated Aquifer.Microbiol Spectr2022
34689183Activity-based, genome-resolved metagenomics uncovers key populations and pathways involved in subsurface conversions of coal to methane.ISME J2022
34184913Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance.mSystems2021
33541873Draft Genome Sequence of Methanothermobacter thermautotrophicus WHS, a Thermophilic Hydrogenotrophic Methanogen from Washburn Hot Springs in Yellowstone National Park, USA.Microbiol Resour Announc2021
33841364Mechanism Across Scales: A Holistic Modeling Framework Integrating Laboratory and Field Studies for Microbial Ecology.Front Microbiol2021
32252814Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicity.Microbiome2020
33447806The establishment of the CBE launched biofilms as a field of specialized research.Biofilm2020
32861995The Guaymas Basin Subseafloor Sedimentary Archaeome Reflects Complex Environmental Histories.iScience2020
32986713In-field bioreactors demonstrate dynamic shifts in microbial communities in response to geochemical perturbations.PLoS One2020
32417512Characterization of subsurface media from locations up- and down-gradient of a uranium-contaminated aquifer.Chemosphere2020
31260289Determining the Reliability of Measuring Mercury Cycling Gene Abundance with Correlations with Mercury and Methylmercury Concentrations.Environ Sci Technol2019
31387058High spatiotemporal variability of bacterial diversity over short time scales with unique hydrochemical associations within a shallow aquifer.Water Res2019
31301204Facultative and anaerobic consortia of haloalkaliphilic ureolytic micro-organisms capable of precipitating calcium carbonate.J Appl Microbiol2019
31402749Bulk phase resource ratio alters carbon steel corrosion rates and endogenously produced extracellular electron transfer mediators in a sulfate-reducing biofilm.Biofouling2019
29429007Cr(VI) reduction and physiological toxicity are impacted by resource ratio in Desulfovibrio vulgaris.Appl Microbiol Biotechnol2018
30069722Microbial community changes during a toxic cyanobacterial bloom in an alkaline Hungarian lake.Antonie Van Leeuwenhoek2018
30265315Impact of hydrologic boundaries on microbial planktonic and biofilm communities in shallow terrestrial subsurface environments.FEMS Microbiol Ecol2018
29472366Competitive resource allocation to metabolic pathways contributes to overflow metabolisms and emergent properties in cross-feeding microbial consortia.Biochem Soc Trans2018
29463661Microbial Functional Gene Diversity Predicts Groundwater Contamination and Ecosystem Functioning.mBio2018
28775334Occurrence and expression of novel methyl-coenzyme M reductase gene (mcrA) variants in hot spring sediments.Sci Rep2017
28112946Temporal Dynamics of In-Field Bioreactor Populations Reflect the Groundwater System and Respond Predictably to Perturbation.Environ Sci Technol2017
28300407Dynamic Succession of Groundwater Sulfate-Reducing Communities during Prolonged Reduction of Uranium in a Contaminated Aquifer.Environ Sci Technol2017
28448069Systems biology guided by XCMS Online metabolomics.Nat Methods2017
29042504Unintended Laboratory-Driven Evolution Reveals Genetic Requirements for Biofilm Formation by <i>Desulfovibrio vulgaris</i> Hildenborough.mBio2017
26779138A Lipid-Accumulating Alga Maintains Growth in Outdoor, Alkaliphilic Raceway Pond with Mixed Microbial Communities.Front Microbiol2016
27811105Complete Genome Sequence of Alkaliphilus metalliredigens Strain QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-Contaminated Leachate Ponds.Genome Announc2016
27560777Smartphone Analytics: Mobilizing the Lab into the Cloud for Omic-Scale Analyses.Anal Chem2016
26967105Engineering microbial consortia for controllable outputs.ISME J2016
25601659Comprehensive bioimaging with fluorinated nanoparticles using breathable liquids.Nat Commun2015
26404608Complete Genome Sequence of Pelosinus fermentans JBW45, a Member of a Remarkably Competitive Group of Negativicutes in the Firmicutes Phylum.Genome Announc2015
26583008Comparative metagenomics reveals impact of contaminants on groundwater microbiomes.Front Microbiol2015
26235787Potential Role of Acetyl-CoA Synthetase (acs) and Malate Dehydrogenase (mae) in the Evolution of the Acetate Switch in Bacteria and Archaea.Sci Rep2015
25835088A Slow-Release Substrate Stimulates Groundwater Microbial Communities for Long-Term in Situ Cr(VI) Reduction.Environ Sci Technol2015
25848870Rapid selective sweep of pre-existing polymorphisms and slow fixation of new mutations in experimental evolution of Desulfovibrio vulgaris.ISME J2015
25968645Natural bacterial communities serve as quantitative geochemical biosensors.mBio2015
25614562Complete Genome Sequence of Anaeromyxobacter sp. Fw109-5, an Anaerobic, Metal-Reducing Bacterium Isolated from a Contaminated Subsurface Environment.Genome Announc2015
25767232High-Quality Draft Genome Sequence of Desulfovibrio carbinoliphilus FW-101-2B, an Organic Acid-Oxidizing Sulfate-Reducing Bacterium Isolated from Uranium(VI)-Contaminated Groundwater.Genome Announc2015
25496351Autonomous metabolomics for rapid metabolite identification in global profiling.Anal Chem2015
24695829Sources and resources: importance of nutrients, resource allocation, and ecology in microalgal cultivation for lipid accumulation.Appl Microbiol Biotechnol2014
25566209Biofilm growth mode promotes maximum carrying capacity and community stability during product inhibition syntrophy.Front Microbiol2014
25120537Identification of a cyclic-di-GMP-modulating response regulator that impacts biofilm formation in a model sulfate reducing bacterium.Front Microbiol2014
248388873D-fluorescence in situ hybridization of intact, anaerobic biofilm.Methods Mol Biol2014
24740970Correction: Strong inter-population cooperation leads to partner intermixing in microbial communities.Elife2014
23359860Strong inter-population cooperation leads to partner intermixing in microbial communities.Elife2013
24282404Archaeal and bacterial communities in three alkaline hot springs in Heart Lake Geyser Basin, Yellowstone National Park.Front Microbiol2013
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E O Lawrence Berkeley National Laboratory, UCSF Medical Center, University of California, Berkeley, University of Chicago
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