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Author Details

Se??n I O'Donoghue
University of NSW
1991
61
28
Gloria M Sheynkman (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
34156943Collaborative Sense-Making in Genomic Research: The Role of Visualisation.IEEE Trans Vis Comput Graph2022
35961013A roadmap for the functional annotation of protein families: a community perspective.Database (Oxford)2022
36189795Increased core body temperature exacerbates defective protein prenylation in mouse models of mevalonate kinase deficiency.J Clin Invest2022
34156943Collaborative Sense-Making in Genomic Research: The Role of Visualisation.IEEE Trans Vis Comput Graph2022
35961013A roadmap for the functional annotation of protein families: a community perspective.Database (Oxford)2022
36189795Increased core body temperature exacerbates defective protein prenylation in mouse models of mevalonate kinase deficiency.J Clin Invest2022
33999203PredictProtein - Predicting Protein Structure and Function for 29 Years.Nucleic Acids Res2021
36303723Grand Challenges in Bioinformatics Data Visualization.Front Bioinform2021
33852842Single-cell transcriptomics reveals involution mimicry during the specification of the basal breast cancer subtype.Cell Rep2021
33999203PredictProtein - Predicting Protein Structure and Function for 29 Years.Nucleic Acids Res2021
34519429SARS-CoV-2 structural coverage map reveals viral protein assembly, mimicry, and hijacking mechanisms.Mol Syst Biol2021
36303723Grand Challenges in Bioinformatics Data Visualization.Front Bioinform2021
33852842Single-cell transcriptomics reveals involution mimicry during the specification of the basal breast cancer subtype.Cell Rep2021
34519429SARS-CoV-2 structural coverage map reveals viral protein assembly, mimicry, and hijacking mechanisms.Mol Syst Biol2021
32678105Temporal ordering of omics and multiomic events inferred from time-series data.NPJ Syst Biol Appl2020
32678105Temporal ordering of omics and multiomic events inferred from time-series data.NPJ Syst Biol Appl2020
30769119Visualization and Analysis of Epiproteome Dynamics.J Mol Biol2019
31626778SnapShot: S-Phase Entry and Exit.Cell2019
31564470Molecular Graphics: Bridging Structural Biologists and Computer Scientists.Structure2019
31297408A benchmark dataset for analyzing and visualizing the dynamic epiproteome.Data Brief2019
30769119Visualization and Analysis of Epiproteome Dynamics.J Mol Biol2019
31297408A benchmark dataset for analyzing and visualizing the dynamic epiproteome.Data Brief2019
31626778SnapShot: S-Phase Entry and Exit.Cell2019
31564470Molecular Graphics: Bridging Structural Biologists and Computer Scientists.Structure2019
30318701Dark Proteins Important for Cellular Function.Proteomics2018
30318701Dark Proteins Important for Cellular Function.Proteomics2018
28736578The Dark Proteome Database.BioData Min2017
28736578The Dark Proteome Database.BioData Min2017
28622516SnapShot: Phosphoregulation of Mitosis.Cell2017
28622516SnapShot: Phosphoregulation of Mitosis.Cell2017
27053337Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations.Genome Res2016
27053337Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations.Genome Res2016
27498913Monogenic and polygenic determinants of sarcoma risk: an international genetic study.Lancet Oncol2016
27498913Monogenic and polygenic determinants of sarcoma risk: an international genetic study.Lancet Oncol2016
25088781How to learn about gene function: text-mining or ontologies?Methods2015
25633501Aquaria: simplifying discovery and insight from protein structures.Nat Methods2015
25957692SnapShot: Insulin/IGF1 Signaling.Cell2015
25381099Visual analytics of signalling pathways using time profiles.Adv Exp Med Biol2015
26157623Comprehensive comparison of large-scale tissue expression datasets.PeerJ2015
26578815Unexpected features of the dark proteome.Proc Natl Acad Sci U S A2015
26329268Integrated visual analysis of protein structures, sequences, and feature data.BMC Bioinformatics2015
25088781How to learn about gene function: text-mining or ontologies?Methods2015
26329268Integrated visual analysis of protein structures, sequences, and feature data.BMC Bioinformatics2015
26578815Unexpected features of the dark proteome.Proc Natl Acad Sci U S A2015
26157623Comprehensive comparison of large-scale tissue expression datasets.PeerJ2015
25957692SnapShot: Insulin/IGF1 Signaling.Cell2015
25633501Aquaria: simplifying discovery and insight from protein structures.Nat Methods2015
25381099Visual analytics of signalling pathways using time profiles.Adv Exp Med Biol2015
24573882COMPARTMENTS: unification and visualization of protein subcellular localization evidence.Database (Oxford)2014
25340810Visualising intrinsic disorder and conformational variation in protein ensembles.Faraday Discuss2014
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Collaborators

Michael Nilges
Institut Pasteur
Co-authored papers 11
Reinhard Schneider
Co-authored papers 8
Burkhard Rost
Technical University of Munich (TUM)
Co-authored papers 7
Lars Juhl Jensen
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen
Co-authored papers 6
Christian Dallago
TUM (Technical University of Munich) Department of Informatics
Co-authored papers 3
Cristobal G Dos Remedios
Victor Chang Cardiac Research Institute
Co-authored papers 3
Miguel A Andrade-Navarro
Institute of Organismic and Molecular Evolution, Johannes Gutenberg University
Co-authored papers 2
Evangelos Pafilis
Institute of Marine Biology
Co-authored papers 2
Arthur J Olson
Co-authored papers 2
Kalliopi Tsafou
Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard
Co-authored papers 2
Nils Gehlenborg
Harvard Medical School
Co-authored papers 2
Anne-Claude Gavin
Co-authored papers 2
Nils Gehlenborg
Co-authored papers 2
James B Procter
Co-authored papers 2
David S Goodsell
The State University of New Jersey
Co-authored papers 2
Manuel C Peitsch
Philip Morris International Research Laboratories Pte. Ltd
Co-authored papers 1
Lucy J Colwell
Google Research
Co-authored papers 1
Alan Bridge
carnegie mellon university
Co-authored papers 1
Ana Conesa
Institute for Integrative Systems Biology, Spanish National Research Council (CSIC)
Co-authored papers 1
Erica Watson Carter
University of Florida Citrus Research and Education Center
Co-authored papers 1
Rebecca C Wade
Center for Molecular Biology (ZMBH), Heidelberg University
Co-authored papers 1
Isabelle Ray-Coquard
University Claude Bernard Lyon I
Co-authored papers 1
Jamie I Fletcher
Co-authored papers 1
Thomas Walter
PSL University
Co-authored papers 1
Chris Sander
Broad Institute of MIT and Harvard
Co-authored papers 1
David Vallenet
Institut Francois Jacob, CNRS, Universite d'Evry, Universite Paris-Saclay
Co-authored papers 1
Dietrich Rebholz-Schuhmann
University of Cologne
Co-authored papers 1
Richard J Roberts
Co-authored papers 1
Liudmyla Kondratova
Genetics Institute, University of Florida
Co-authored papers 1
Stacey Cleveland
University of Florida
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Release 1.2