Author details

Full Name

Xiaopeng Zhu

Affiliation

ORCID

Career Start Year

2002

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
34828296	LGFC-CNN: Prediction of lncRNA-Protein Interactions by Using Multiple Types of Features through Deep Learning.	Genes	2021
34157308	Genome-wide mapping of human DNA replication by optical replication mapping supports a stochastic model of eukaryotic replication.	Mol Cell	2021
32066908	Author Correction: Ribosomes guide pachytene piRNA formation on long intergenic piRNA precursors.	Nat Cell Biol	2020
31907193	MOCHI enables discovery of heterogeneous interactome modules in 3D nucleome.	Genome Research	2020
32015435	Ribosomes guide pachytene piRNA formation on long intergenic piRNA precursors.	Nat Cell Biol	2020
29454939	Comparative Analysis of Immune Cells Reveals a Conserved Regulatory Lexicon.	Cell Syst	2018
29219070	Predicting human splicing branchpoints by combining sequence-derived features and multi-label learning methods.	BMC Bioinformatics	2017
28335028	Defining the 5Î¿ and 3Î¿ landscape of the Drosophila transcriptome with Exo-seq and RNaseH-seq.	Nucleic Acids Res	2017
27074043	Accurate Prediction of Transposon-Derived piRNAs by Integrating Various Sequential and Physicochemical Features.	PLoS One	2016
26838501	Evolutionary analysis across mammals reveals distinct classes of long non-coding RNAs.	Genome Biol	2016
21227919	Experimental RNomics and genomic comparative analysis reveal a large group of species-specific small non-message RNAs in the silkworm Bombyx mori.	Nucleic Acids Research	2011
21310084	Estimating developmental states of tumors and normal tissues using a linear time-ordered model.	BMC Bioinformatics	2011
21378118	The Caenorhabditis elegans intermediate-size transcriptome shows high degree of stage-specific expression.	Nucleic Acids Research	2011
21283513	Estimating the quality of reprogrammed cells using ES cell differentiation expression patterns.	PLoS ONE	2011
20086188	Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids.	Plant Cell	2010
20977655	Expression analysis of miRNAs and highly-expressed small RNAs in two rice subspecies and their reciprocal hybrids.	Journal of Integrative Plant Biology	2010
19232136	Transcriptional inhibiton of Hoxd4 expression by miRNA-10a in human breast cancer cells.	BMC Molecular Biology	2009
19243610	Genome-scale identification of Caenorhabditis elegans regulatory elements by tiling-array mapping of DNase I hypersensitive sites.	BMC Genomics	2009
19720738	Systematic identification and characterization of chicken (Gallus gallus) ncRNAs.	Nucleic Acids Research	2009
18492288	MicroRNA-encoding long non-coding RNAs.	BMC Genomics	2008
17531812	Evolutionarily conserved multisubunit RBL2/p130 and E2F4 protein complex represses human cell cycle-dependent genes in quiescence.	Molecular Cell	2007
17785534	Mapping the C. elegans noncoding transcriptome with a whole-genome tiling microarray.	Genome Research	2007
17727723	Model-based analysis of two-color arrays (MA2C).	Genome Biol	2007
16425273	Prediction of structured non-coding RNAs in the genomes of the nematodes Caenorhabditis elegans and Caenorhabditis briggsae.	Journal of Experimental Zoology Part B: Molecular and Developmental Evolution	2006
16638152	A novel scoring schema for peptide identification by searching protein sequence databases using tandem mass spectrometry data.	BMC Bioinformatics	2006
16574072	Identifying Hfq-binding small RNA targets in Escherichia coli.	Biochemical and Biophysical Research Communications	2006
16699597	Dynamic changes in subgraph preference profiles of crucial transcription factors.	PLoS Computational Biology	2006
16690033	Integrated analysis of multiple data sources reveals modular structure of biological networks.	Biochemical and Biophysical Research Communications	2006
16684350	Phylophenetic properties of metabolic pathway topologies as revealed by global analysis.	BMC Bioinformatics	2006
16738136	Profiling Caenorhabditis elegans non-coding RNA expression with a combined microarray.	Nucleic Acids Res	2006
16344563	Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression.	Genome Res	2006
16381834	NPInter: the noncoding RNAs and protein related biomacromolecules interaction database.	Nucleic Acids Research	2006
16007777	Performance analysis of very-small-aperture lasers.	Optics Letters	2005
15028113	Date of origin of the SARS coronavirus strains.	BMC Infectious Diseases	2004
15356297	The interactome as a tree--an attempt to visualize the protein-protein interaction network in yeast.	Nucleic Acids Research	2004
12711690	Topological structure analysis of the protein-protein interaction network in budding yeast.	Nucleic Acids Research	2003
18759037	Small RNA in rice genome.		2002