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Author Details

Robin Andersson
University of Copenhagen
2007
62
30
PMIDPaper TitleJournal TitlePublished Year
37358952Pooled analysis of frontal lobe transcriptomic data identifies key mitophagy gene changes in Alzheimer's disease brain.Front Aging Neurosci2023
37158788Transcription factor expression is the main determinant of variability in gene co-activity.Mol Syst Biol2023
37007588Transfer learning identifies sequence determinants of cell-type specific regulatory element accessibility.NAR Genom Bioinform2023
35166831Endogenous retroviruses co-opted as divergently transcribed regulatory elements shape the regulatory landscape of embryonic stem cells.Nucleic Acids Res2022
36377861Promoter sequence and architecture determine expression variability and confer robustness to genetic variants.Elife2022
34363071Genome-wide and sister chromatid-resolved profiling of protein occupancy in replicated chromatin with ChOR-seq and SCAR-seq.Nat Protoc2021
34591015Principles of mRNA targeting via the <i>Arabidopsis</i> m<sup>6</sup>A-binding protein ECT2.Elife2021
34591013The YTHDF proteins ECT2 and ECT3 bind largely overlapping target sets and influence target mRNA abundance, not alternative polyadenylation.Elife2021
31605096Determinants of enhancer and promoter activities of regulatory elements.Nat Rev Genet2020
32719792The Transcriptional Network That Controls Growth Arrest and Macrophage Differentiation in the Human Myeloid Leukemia Cell Line THP-1.Front Cell Dev Biol2020
32718981Comparative transcriptomics of primary cells in vertebrates.Genome Res2020
30672466PLZF targets developmental enhancers for activation during osteogenic differentiation of human mesenchymal stem cells.Elife2019
31585526CAGEfightR: analysis of 5'-end data using R/Bioconductor.BMC Bioinformatics2019
29311636Loss-of-function variants in ADCY3 increase risk of obesity and type 2 diabetes.Nat Genet2018
30212902The RNA exosome contributes to gene expression regulation during stem cell differentiation.Nucleic Acids Res2018
30115746MCM2 promotes symmetric inheritance of modified histones during DNA replication.Science2018
29695774Characterization of the enhancer and promoter landscape of inflammatory bowel disease from human colon biopsies.Nat Commun2018
29494619Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease.PLoS Comput Biol2018
29659982Transcription start site analysis reveals widespread divergent transcription in D. melanogaster and core promoter-encoded enhancer activities.Nucleic Acids Res2018
29402885Transcriptional decomposition reveals active chromatin architectures and cell specific regulatory interactions.Nat Commun2018
27803022Transcriptional Dynamics During Human Adipogenesis and Its Link to Adipose Morphology and Distribution.Diabetes2017
28345861Identification of Gene Transcription Start Sites and Enhancers Responding to Pulmonary Carbon Nanotube Exposure in Vivo.ACS Nano2017
27794045Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals.Nucleic Acids Res2017
26902262Regulating retrotransposon activity through the use of alternative transcription start sites.EMBO Rep2016
26552699Transcriptome Analysis of Recurrently Deregulated Genes across Multiple Cancers Identifies New Pan-Cancer Biomarkers.Cancer Res2016
28025337On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase.Database (Oxford)2016
27989964Histone acetylation of glucose-induced thioredoxin-interacting protein gene expression in pancreatic islets.Int J Biochem Cell Biol2016
27455346Principles for RNA metabolism and alternative transcription initiation within closely spaced promoters.Nat Genet2016
25450156Promoter or enhancer, what's the difference? Deconstruction of established distinctions and presentation of a unifying model.Bioessays2015
26545074Human Gene Promoters Are Intrinsically Bidirectional.Mol Cell2015
26673794Remodeling of retrotransposon elements during epigenetic induction of adult visual cortical plasticity by HDAC inhibitors.Epigenetics Chromatin2015
26073855A unified architecture of transcriptional regulatory elements.Trends Genet2015
26228054The frequent evolutionary birth and death of functional promoters in mouse and human.Genome Res2015
25678556Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells.Science2015
24299735Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome.Genome Res2014
25539566CAGE-defined promoter regions of the genes implicated in Rett Syndrome.BMC Genomics2014
25387874Nuclear stability and transcriptional directionality separate functionally distinct RNA species.Nat Commun2014
24990076Identification of TNF-α-responsive promoters and enhancers in the intestinal epithelial cell model Caco-2.DNA Res2014
24777452Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance.Nat Genet2014
24771338Nucleosome regulatory dynamics in response to TGFβ.Nucleic Acids Res2014
24670763An atlas of active enhancers across human cell types and tissues.Nature2014
24670764A promoter-level mammalian expression atlas.Nature2014
24703491Transcriptional profiling of the human fibrillin/LTBP gene family, key regulators of mesenchymal cell functions.Mol Genet Metab2014
24671952Analysis of the DNA methylome and transcriptome in granulopoiesis reveals timed changes and dynamic enhancer methylation.Blood2014
23851456Polyadenylation site-induced decay of upstream transcripts enforces promoter directionality.Nat Struct Mol Biol2013
22248020A strand specific high resolution normalization method for chip-sequencing data employing multiple experimental control measurements.Algorithms Mol Biol2012
22011431Cancer associated epigenetic transitions identified by genome-wide histone methylation binding profiles in human colorectal cancer samples and paired normal mucosa.BMC Cancer2011
20051991Frequent genetic differences between matched primary and metastatic breast cancer provide an approach to identification of biomarkers for disease progression.Eur J Hum Genet2010
20707885SICTIN: Rapid footprinting of massively parallel sequencing data.BioData Min2010
20534969Integrative epigenomic and genomic analysis of malignant pheochromocytoma.Exp Mol Med2010
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Collaborators

Albin Sandelin
University of Copenhagen
Co-authored papers 28
Jan Komorowski
Co-authored papers 15
Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
Co-authored papers 14
Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 14
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Co-authored papers 13
Timo Lassmann
Telethon Kids Institute, University of Western Australia
Co-authored papers 11
Jette Bornholdt
University of Copenhagen
Co-authored papers 10
Yoshihide Hayashizaki
Center for Integrative Medical Sciences
Co-authored papers 10
Yun Chen
Hospital of Obstetrics and Gynecology, Fudan University
Co-authored papers 9
Masayoshi Itoh
RIKEN Center for Integrative Medical Sciences
Co-authored papers 9
Sarah Rennie
University of Copenhagen
Co-authored papers 8
Mette Boyd
University of Copenhagen
Co-authored papers 8
Dave S B Hoon
Saint John's Cancer Institute at Saint John's Health Center
Co-authored papers 8
Berit Lilje
Statens Serum Institut
Co-authored papers 7
Erik Arner
RIKEN Center for Integrative Medical Sciences (IMS)
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Stefan Enroth
Co-authored papers 7
Claes Wadelius
Co-authored papers 7
Torben Heick Jensen
Universitetsbyen 81, Aarhus University
Co-authored papers 7
Morana Vitezic
University of Copenhagen
Co-authored papers 7
Carsten O Daub
International Institute of Molecular and Cell Biology in Warsaw
Co-authored papers 6
Jessica Severin
Center for Integrative Medical Sciences
Co-authored papers 6
Nicolas Bertin
University Bordeaux, CNRS
Co-authored papers 6
Andreas Lennartsson
Karolinska Institute
Co-authored papers 6
Kristoffer Vitting-Seerup
Technical University of Denmark
Co-authored papers 6
David A Hume
Mater Research Institute-UQ, Translational Research Institute
Co-authored papers 5
John Kenneth Baillie
Roslin Institute, University of Edinburgh
Co-authored papers 5
Alka Saxena
Biomedical Research Centre at Guy's Hospital
Co-authored papers 5
Harukazu Suzuki
RIKEN Center for Integrative Medical Sciences
Co-authored papers 5
Eivind Valen
University of Bergen
Co-authored papers 5
Marina Lizio
Cerevance Ltd
Co-authored papers 5
Release 1.2