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Author Details

Neil Hall
Earlham Institute
2000
158
56
PMIDPaper TitleJournal TitlePublished Year
35042801Why sequence all eukaryotes?Proc Natl Acad Sci U S A2022
35803242Flaviviruses hijack the host microbiota to facilitate their transmission.Cell2022
33349664Stepwise evolution of Salmonella Typhimurium ST313 causing bloodstream infection in Africa.Nat Microbiol2021
33494661COVID-19 evolution during the pandemic - Implications of new SARS-CoV-2 variants on disease control and public health policies.Virulence2021
33493332Characteristics of Salmonella Recovered From Stools of Children Enrolled in the Global Enteric Multicenter Study.Clin Infect Dis2021
33816346Taxon-Specific Proteins of the Pathogenic <i>Entamoeba</i> Species <i>E. histolytica</i> and <i>E. nuttalli</i>.Front Cell Infect Microbiol2021
33893390Ecological niche adaptation of Salmonella Typhimurium U288 is associated with altered pathogenicity and reduced zoonotic potential.Commun Biol2021
33780514Dissecting the molecular diversity and commonality of bovine and human treponemes identifies key survival and adhesion mechanisms.PLoS Pathog2021
33528570The Mastigamoeba balamuthi Genome and the Nature of the Free-Living Ancestor of Entamoeba.Mol Biol Evol2021
33963185Subtelomeric assembly of a multi-gene pathway for antimicrobial defense compounds in cereals.Nat Commun2021
32541926Author Correction: A transcriptomic analysis of the phylum Nematoda.Nat Genet2020
31999701Increasing prevalence of a fluoroquinolone resistance mutation amongst Campylobacter jejuni isolates from four human infectious intestinal disease studies in the United Kingdom.PLoS One2020
33112226Whole-genome epidemiology links phage-mediated acquisition of a virulence gene to the clonal expansion of a pandemic <i>Salmonella enterica</i> serovar Typhimurium clone.Microb Genom2020
33297948Identification of oligo-adenylated small RNAs in the parasite Entamoeba and a potential role for small RNA control.BMC Genomics2020
33232324Salmonella identified in pigs in Kenya and Malawi reveals the potential for zoonotic transmission in emerging pork markets.PLoS Negl Trop Dis2020
32946436Expanded genome-wide comparisons give novel insights into population structure and genetic heterogeneity of Leishmania tropica complex.PLoS Negl Trop Dis2020
32272904Copy number variation in human genomes from three major ethno-linguistic groups in Africa.BMC Genomics2020
32463309Gene Expression Profiling to Delineate the Anticancer Potential of a New Alkaloid Isopicrinine From <i>Rhazya stricta</i>.Integr Cancer Ther2020
31163033The diversity, evolution and ecology of Salmonella in venomous snakes.PLoS Negl Trop Dis2019
31682609Molecular evolution of cytochrome C oxidase-I protein of insects living in Saudi Arabia.PLoS One2019
31587644Single cell ecology.Philos Trans R Soc Lond B Biol Sci2019
31364699Multilocus Analysis Resolves the European Finch Epidemic Strain of Trichomonas gallinae and Suggests Introgression from Divergent Trichomonads.Genome Biol Evol2019
31249384DNA extraction and amplicon production strategies deeply infâ¿¿luence the outcome of gut mycobiome studies.Sci Rep2019
30982471Analysis of the recombination landscape of hexaploid bread wheat reveals genes controlling recombination and gene conversion frequency.Genome Biol2019
29321239Comparative genomic analysis of the 'pseudofungus' <i>Hyphochytrium catenoides</i>.Open Biol2018
30165630The Structure of a Conserved Telomeric Region Associated with Variant Antigen Loci in the Blood Parasite Trypanosoma congolense.Genome Biol Evol2018
30093548Hidden variation in polyploid wheat drives local adaptation.Genome Res2018
29686237The ash dieback invasion of Europe was founded by two genetically divergent individuals.Nat Ecol Evol2018
29653520A modified sequence capture approach allowing standard and methylation analyses of the same enriched genomic DNA sample.BMC Genomics2018
29507380Genomics of habitat choice and adaptive evolution in a deep-sea fish.Nat Ecol Evol2018
28520766Transcriptomic analysis of salt stress responsive genes in Rhazya stricta.PLoS One2017
28132905Towards better models and mechanistic biomarkers for drug-induced gastrointestinal injury.Pharmacol Ther2017
29202709Transcriptomic and metabolic responses of Calotropis procera to salt and drought stress.BMC Plant Biol2017
29095917Comparison of the human gastric microbiota in hypochlorhydric states arising as a result of Helicobacter pylori-induced atrophic gastritis, autoimmune atrophic gastritis and proton pump inhibitor use.PLoS Pathog2017
28701143SMRT Gate: A method for validation of synthetic constructs on Pacific Biosciences sequencing platforms.Biotechniques2017
28774272Identification of candidate protective variants for common diseases and evaluation of their protective potential.BMC Genomics2017
26058469Bacterial sensing underlies artificial sweetener-induced growth of gut Lactobacillus.Environ Microbiol2016
27842501Analysis of transcriptional response to heat stress in Rhazya stricta.BMC Plant Biol2016
27144898Mapping-by-sequencing in complex polyploid genomes using genic sequence capture: a case study to map yellow rust resistance in hexaploid wheat.Plant J2016
27284025GeneMill: A 21st century platform for innovation.Biochem Soc Trans2016
27251284The industrial melanism mutation in British peppered moths is a transposable element.Nature2016
27276347Characterising the Canine Oral Microbiome by Direct Sequencing of Reverse-Transcribed rRNA Molecules.PLoS One2016
26798090Revised Genome Sequence of the Purple Photosynthetic Bacterium Blastochloris viridis.Genome Announc2016
26763898A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling.BMC Genomics2016
26968756Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data.BMC Bioinformatics2016
25052415Phylogenomics of the killer whale indicates ecotype divergence in sympatry.Heredity (Edinb)2015
26543104Draft Genome Sequence of Bacillus Species from the Rhizosphere of the Desert Plant Rhazya stricta.Genome Announc2015
26248204High Throughput Sequencing of Entamoeba 27nt Small RNA Population Reveals Role in Permanent Gene Silencing But No Effect on Regulating Gene Expression Changes during Stage Conversion, Oxidative, or Heat Shock Stress.PLoS One2015
26653535A genome-wide survey of DNA methylation in hexaploid wheat.Genome Biol2015
26311067A simple procedure for directly obtaining haplotype sequences of diploid genomes.BMC Genomics2015
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Collaborators

Matthew Berriman
Wellcome Sanger Institute
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Bart Barrell
Wellcome Trust Sanger Institute
Co-authored papers 18
Alistair C Darby
Institute of Infection, University of Liverpool
Co-authored papers 17
Christiane Hertz-Fowler
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Co-authored papers 13
Arnab Pain
King Abdullah University of Science and Technology
Co-authored papers 10
Jane M Carlton
Center for Genomics and Systems Biology
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Jamal S M Sabir
King Abdulaziz University
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Co-authored papers 6
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Edinburgh Clinical Research Facility, University of Edinburgh
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Personal Genome Diagnostics Inc.
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Elodie Ghedin
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Wellcome Trust Sanger Institute
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Sharen Bowman
NRC Institute for Marine Biosciences
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Chris I Newbold
Wellcome Trust Sanger Institute
Co-authored papers 4
Christopher Quince
Co-authored papers 4
Jeremy Peterson
The Institute for Genomic Research, 9712 Medical Center Drive
Co-authored papers 4
Jennifer R Wortman
Broad Institute of MIT and Harvard
Co-authored papers 4
Brian J Haas
Broad Institute of MIT and Harvard
Co-authored papers 4
Ian T Paulsen
Macquarie University
Co-authored papers 3
Mihaela Pertea
Center for Computational Biology, Johns Hopkins University
Co-authored papers 3
John Parkinson
The Hospital for Sick Children
Co-authored papers 3
Stuart A Ralph
Bio21 Molecular Science and Biotechnology Institute, University of Melbourne
Co-authored papers 3
Bernard Suh
Center for Biomolecular Science and Engineering, University of California
Co-authored papers 3
Sue Kyes
Weatherall Institute of Molecular Medicine
Co-authored papers 3
Vishvanath Nene
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Release 1.2