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Author Details

Peter E Midford
University of Kansas
2000
29
21
PMIDPaper TitleJournal TitlePublished Year
31813964Pathway Tools version 23.0 update: software for pathway/genome informatics and systems biology.Brief Bioinform2021
33726670Pathway size matters: the influence of pathway granularity on over-representation (enrichment analysis) statistics.BMC Genomics2021
34394059The EcoCyc Database in 2021.Front Microbiol2021
31586394The MetaCyc database of metabolic pathways and enzymes - a 2019 update.Nucleic Acids Res2020
31688932Taxonomic weighting improves the accuracy of a gap-filling algorithm for metabolic models.Bioinformatics2020
29447345The BioCyc collection of microbial genomes and metabolic pathways.Brief Bioinform2019
30853946A Comparison of Microbial Genome Web Portals.Front Microbiol2019
31052521Using Pathway Covering to Explore Connections among Metabolites.Metabolites2019
29059334The MetaCyc database of metabolic pathways and enzymes.Nucleic Acids Res2018
30406744The EcoCyc Database.EcoSal Plus2018
25562316Finding our way through phenotypes.PLoS Biol2015
26385966Synthesis of phylogeny and taxonomy into a comprehensive tree of life.Proc Natl Acad Sci U S A2015
26713234Emerging semantics to link phenotype and environment.PeerJ2015
24595056Semantics in support of biodiversity knowledge discovery: an introduction to the biological collections ontology and related ontologies.PLoS One2014
25247056Patterns in root traits of woody species hosting arbuscular and ectomycorrhizas: implications for the evolution of belowground strategies.Ecol Evol2014
23398853Exploring power and parameter estimation of the BiSSE method for analyzing species diversification.BMC Evol Biol2013
24267744The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes.J Biomed Semantics2013
23668630Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient.BMC Bioinformatics2013
22357728NeXML: rich, extensible, and verifiable representation of comparative data and metadata.Syst Biol2012
22736877500,000 fish phenotypes: The new informatics landscape for evolutionary and developmental biology of the vertebrate skeleton.J Appl Ichthyol2012
20463926Phenex: ontological annotation of phenotypic diversity.PLoS One2010
20547776The teleost anatomy ontology: anatomical representation for the genomics age.Syst Biol2010
20505755Evolutionary characters, phenotypes and ontologies: curating data from the systematic biology literature.PLoS One2010
17464881Within-species variation and measurement error in phylogenetic comparative methods.Syst Biol2007
17849325Estimating a binary character's effect on speciation and extinction.Syst Biol2007
17464883Linking of digital images to phylogenetic data matrices using a morphological ontology.Syst Biol2007
15284105Ontologies for behavior.Bioinformatics2004
18241381Robots aren't the only physical models.Behav Brain Sci2001
10877899Social learning of a novel foraging patch in families of free-living Florida scrub-jays.Anim Behav2000
  • 1 - 29 of 29

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Collaborators

Peter D Karp
Pangea Systems Inc., USA and Marine Biological Laboratory
Co-authored papers 10
James P Balhoff
Renaissance Computing Institute, University of North Carolina
Co-authored papers 8
Hilmar Lapp
Duke University
Co-authored papers 8
Paula M Mabee
University of South Dakota
Co-authored papers 7
Wasila M Dahdul
University of California irvine
Co-authored papers 7
Ingrid M Keseler
Co-authored papers 6
John G Lundberg
Academy of Natural Sciences of Philadelphia and Drexel University (ANSP)
Co-authored papers 5
Todd J Vision
University of North Carolina
Co-authored papers 5
Monte Westerfield
Institute of Neuroscience, University of Oregon
Co-authored papers 5
Mart??n J Ram??rez
Co-authored papers 3
Rutger A Vos
Naturalis Biodiversity Center
Co-authored papers 3
Ramona L Walls
Critical Path Institute
Co-authored papers 3
Melissa A Haendel
American Medical Informatics Association, Oregon Health and Science University, Oregon State University, University of Colorado Anschutz Medical Campus, University of North Carolina at Chapel Hill, University of Wisconsin-Madison
Co-authored papers 2
Lars Vogt
Institut fur Evolutionsbiologie und Okologie, Universitat Bonn
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Christopher J Mungall
International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences
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Chelsea D Specht
Cornell University
Co-authored papers 2
Pankaj Jaiswal
Oregon State University
Co-authored papers 2
Thomas A Dececchi
Mount Marty University
Co-authored papers 2
Pier Luigi Buttigieg
Alfred Wegener Institute
Co-authored papers 2
John Gordon Burleigh
University of Florida
Co-authored papers 2
Melissa A Haendel
Co-authored papers 2
Suzanna E Lewis
Lawrence Berkeley National Laboratory
Co-authored papers 2
David C Blackburn
University of Florida
Co-authored papers 2
Barry Smith
University at Buffalo
Co-authored papers 2
Nico M Franz
Arizona State University
Co-authored papers 2
Laurel Cooper
Oregon State University
Co-authored papers 2
Anne E Thessen
Biodiversity Information Standards, Coastal and Estuarine Research Federation, Oregon State University, Phycological Society of America, Society of Professional Consultants, The Data Detektiv, University of Colorado Anschutz Medical Campus, University of Maryland College Park, Women in the Enterprise of Science and Technology
Co-authored papers 2
Andrew R Deans
The Pennsylvania State University, University Park
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Nizar Ibrahim
University of Portsmouth
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Ian T Paulsen
Macquarie University
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Release 1.2