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Author Details

Alexander Sczyrba
Center for Biotechnology (CeBiTec), Bielefeld University, Universitatsstrasse 27
2000
86
34
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36998097Abundance, classification and genetic potential of Thaumarchaeota in metagenomes of European agricultural soils: a meta-analysis.Environ Microbiome2023
37894070Uncovering Microbiome Adaptations in a Full-Scale Biogas Plant: Insights from MAG-Centric Metagenomics and Metaproteomics.Microorganisms2023
37249060Advances in the clinical use of metaproteomics.Expert Rev Proteomics2023
36998097Abundance, classification and genetic potential of Thaumarchaeota in metagenomes of European agricultural soils: a meta-analysis.Environ Microbiome2023
37894070Uncovering Microbiome Adaptations in a Full-Scale Biogas Plant: Insights from MAG-Centric Metagenomics and Metaproteomics.Microorganisms2023
37249060Advances in the clinical use of metaproteomics.Expert Rev Proteomics2023
36384582Adaptation of a microbial community to demand-oriented biological methanation.Biotechnol Biofuels Bioprod2022
36296248Effect of Growth Media on the Diversity of <i>Neocallimastigomycetes</i> from Non-Rumen Habitats.Microorganisms2022
36144352Simultaneous Metabarcoding and Quantification of <i>Neocallimastigomycetes</i> from Environmental Samples: Insights into Community Composition and Novel Lineages.Microorganisms2022
36439843The novel oligopeptide utilizing species <i>Anaeropeptidivorans aminofermentans</i> M3/9<sup>T</sup>, its role in anaerobic digestion and occurrence as deduced from large-scale fragment recruitment analyses.Front Microbiol2022
36384582Adaptation of a microbial community to demand-oriented biological methanation.Biotechnol Biofuels Bioprod2022
36694818Reekeekee- and roodoodooviruses, two different <i>Microviridae</i> clades constituted by the smallest DNA phages.Virus Evol2022
36694818Reekeekee- and roodoodooviruses, two different <i>Microviridae</i> clades constituted by the smallest DNA phages.Virus Evol2022
36439843The novel oligopeptide utilizing species <i>Anaeropeptidivorans aminofermentans</i> M3/9<sup>T</sup>, its role in anaerobic digestion and occurrence as deduced from large-scale fragment recruitment analyses.Front Microbiol2022
36144352Simultaneous Metabarcoding and Quantification of <i>Neocallimastigomycetes</i> from Environmental Samples: Insights into Community Composition and Novel Lineages.Microorganisms2022
36296248Effect of Growth Media on the Diversity of <i>Neocallimastigomycetes</i> from Non-Rumen Habitats.Microorganisms2022
30915459Evaluation of commercially available DNA extraction kits for the analysis of the broiler chicken cecal microbiota.FEMS Microbiol Lett2021
34281604Haploflow: strain-resolved de novo assembly of viral genomes.Genome Biol2021
34114607Going to extremes - a metagenomic journey into the dark matter of life.FEMS Microbiol Lett2021
33532769Haploflow: Strain-resolved <i>de novo</i> assembly of viral genomes.bioRxiv2021
33669534Identification of Beneficial Microbial Consortia and Bioactive Compounds with Potential as Plant Biostimulants for a Sustainable Agriculture.Microorganisms2021
33462312Phytoplankton consortia as a blueprint for mutually beneficial eukaryote-bacteria ecosystems based on the biocoenosis of Botryococcus consortia.Sci Rep2021
33649565Tutorial: assessing metagenomics software with the CAMI benchmarking toolkit.Nat Protoc2021
34578452Multiple Occurrences of a 168-Nucleotide Deletion in SARS-CoV-2 ORF8, Unnoticed by Standard Amplicon Sequencing and Variant Calling Pipelines.Viruses2021
34911965Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows.Nat Commun2021
30915459Evaluation of commercially available DNA extraction kits for the analysis of the broiler chicken cecal microbiota.FEMS Microbiol Lett2021
33649565Tutorial: assessing metagenomics software with the CAMI benchmarking toolkit.Nat Protoc2021
33669534Identification of Beneficial Microbial Consortia and Bioactive Compounds with Potential as Plant Biostimulants for a Sustainable Agriculture.Microorganisms2021
33532769Haploflow: Strain-resolved <i>de novo</i> assembly of viral genomes.bioRxiv2021
34911965Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows.Nat Commun2021
34578452Multiple Occurrences of a 168-Nucleotide Deletion in SARS-CoV-2 ORF8, Unnoticed by Standard Amplicon Sequencing and Variant Calling Pipelines.Viruses2021
34114607Going to extremes - a metagenomic journey into the dark matter of life.FEMS Microbiol Lett2021
34281604Haploflow: strain-resolved de novo assembly of viral genomes.Genome Biol2021
33462312Phytoplankton consortia as a blueprint for mutually beneficial eukaryote-bacteria ecosystems based on the biocoenosis of Botryococcus consortia.Sci Rep2021
32130896An Integrated Metagenome Catalog Reveals New Insights into the Murine Gut Microbiome.Cell Rep2020
32130896An Integrated Metagenome Catalog Reveals New Insights into the Murine Gut Microbiome.Cell Rep2020
33902713Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics.Environ Microbiome2020
33348776The Role of <i>Petrimonas mucosa</i> ING2-E5A<sup>T</sup> in Mesophilic Biogas Reactor Systems as Deduced from Multiomics Analyses.Microorganisms2020
33129266ConCysFind: a pipeline tool to predict conserved amino acids of protein sequences across the plant kingdom.BMC Bioinformatics2020
32560349Importance of <i>Defluviitalea raffinosedens</i> for Hydrolytic Biomass Degradation in Co-Culture with <i>Hungateiclostridium thermocellum</i>.Microorganisms2020
33902713Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics.Environ Microbiome2020
33129266ConCysFind: a pipeline tool to predict conserved amino acids of protein sequences across the plant kingdom.BMC Bioinformatics2020
33348776The Role of <i>Petrimonas mucosa</i> ING2-E5A<sup>T</sup> in Mesophilic Biogas Reactor Systems as Deduced from Multiomics Analyses.Microorganisms2020
32560349Importance of <i>Defluviitalea raffinosedens</i> for Hydrolytic Biomass Degradation in Co-Culture with <i>Hungateiclostridium thermocellum</i>.Microorganisms2020
31163637Effect of Long-Term Farming Practices on Agricultural Soil Microbiome Members Represented by Metagenomically Assembled Genomes (MAGs) and Their Predicted Plant-Beneficial Genes.Genes (Basel)2019
31163637Effect of Long-Term Farming Practices on Agricultural Soil Microbiome Members Represented by Metagenomically Assembled Genomes (MAGs) and Their Predicted Plant-Beneficial Genes.Genes (Basel)2019
30736849CAMISIM: simulating metagenomes and microbial communities.Microbiome2019
31354949de.NBI Cloud federation through ELIXIR AAI.F1000Res2019
31354949de.NBI Cloud federation through ELIXIR AAI.F1000Res2019
30736849CAMISIM: simulating metagenomes and microbial communities.Microbiome2019
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Collaborators

Tanja Woyke
Co-authored papers 19
Andreas Bremges
Co-authored papers 17
Alice C McHardy
Computational Biology of Infection Research, Helmholtz Centre for Infection Research
Co-authored papers 10
Peter Belmann
Co-authored papers 9
Adrian Fritz
Co-authored papers 6
Alexander Goesmann
Co-authored papers 5
Edward M Rubin
Co-authored papers 5
Michael Beckstette
Co-authored papers 4
Aaron E Darling
Co-authored papers 4
Terry Gaasterland
Scripps Institution of Oceanography, University of California San Diego
Co-authored papers 3
Johannes Dröge
Co-authored papers 3
Peter Hofmann
Co-authored papers 3
Nikos C Kyrpides
Co-authored papers 3
Fernando Meyer
Co-authored papers 3
Burkhard Morgenstern
Institute of Microbiology and Genetics
Co-authored papers 3
Søren J Sørensen
Co-authored papers 3
Jonathan A Eisen
McLean Hospital
Co-authored papers 2
Alexander Dilthey
Co-authored papers 2
Matthew Z DeMaere
Co-authored papers 2
Erdmann Rapp
Co-authored papers 2
Zhong Wang
US Department of Energy, Joint Genome Institute
Co-authored papers 2
Jessika Fiedler
Co-authored papers 2
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Celgene Corporation
Co-authored papers 2
Alexey Gurevich
Co-authored papers 2
Eik Dahms
Co-authored papers 2
Folker Meyer
Institute for Artificial Intelligence, University of Duisburg-Essen
Co-authored papers 2
Ruben Garrido-Oter
Co-authored papers 2
Ali H Brivanlou
the Rockefeller University
Co-authored papers 2
David Koslicki
and the Huck Institutes of the Life Sciences, Penn State University, University Park
Co-authored papers 2
Stefan Bekiranov
University of Virginia
Co-authored papers 2
Release 1.2