Author details

Full Name

France Denoeud

Affiliation

ORCID

Career Start Year

2000

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36685651	The complete plastome of subsp. (Hoffmanns. & Link) M.LaÃnz (Gentianaceae), the first chloroplast genome belonging to the genus.		2023
37264421	Pervasive tandem duplications and convergent evolution shape coral genomes.		2023
36816053	The complete plastome of subsp. (Samp.) D.C.Thomas (Boraginaceae), the first chloroplast genome belonging to the genus.		2023
35015377	ORTHOSKIM: In silico sequence capture from genomic and transcriptomic libraries for phylogenomic and barcoding applications.	Molecular Ecology Resources	2022
36170372	Postglacial species arrival and diversity buildup of northern ecosystems took millennia.	Science advances	2022
36163291	Author Correction: Late Quaternary dynamics of Arctic biota from ancient environmental genomics.	Nature	2022
36450908	Reply to: When did mammoths go extinct?	Nature	2022
35296866	Author Correction: Late Quaternary dynamics of Arctic biota from ancient environmental genomics.	Nature	2022
34671161	Late Quaternary dynamics of Arctic biota from ancient environmental genomics.	Nature	2021
33319912	Long-read assembly of the Brassica napus reference genome Darmor-bzh.	GigaScience	2020
32244605	The Treasure Vault Can be Opened: Large-Scale Genome Skimming Works Well Using Herbarium and Silica Gel Dried Material.	Plants	2020
30604905	Cytonuclear interactions remain stable during allopolyploid evolution despite repeated whole-genome duplications in Brassica.	Plant Journal	2019
30390080	Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps.		2018
24516393	The streamlined genome of Phytomonas spp. relative to human pathogenic kinetoplastids reveals a parasite tailored for plants.	PLoS Genet	2014
24916971	Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea.	Genome Biol	2014
25190796	The coffee genome provides insight into the convergent evolution of caffeine biosynthesis.	Science	2014
24852848	The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes.	Nat Commun	2014
25146293	Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.	Science	2014
23503846	Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida.	Proc Natl Acad Sci U S A	2013
22300585	Conservation and divergence of chemical defense system in the tunicate Oikopleura dioica revealed by genome wide response to two xenobiotics.	BMC Genomics	2012
22801500	The banana (Musa acuminata) genome and the evolution of monocotyledonous plants.	Nature	2012
21439036	Genome sequence of the stramenopile Blastocystis, a human anaerobic parasite.		2011
20348908	PÃ©rigord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis.	Nature	2010
21097902	Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate.	Science	2010
19562714	Variation in novel exons (RACEfrags) of the MECP2 gene in Rett syndrome patients and controls.	Hum Mutat	2009
18500348	Efficient targeted transcript discovery via array-based normalization of RACE libraries.	Nat Methods	2008
19087247	Annotating genomes with massive-scale RNA sequencing.	Genome Biol	2008
17571346	Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.	Nature	2007
17568003	Structured RNAs in the ENCODE selected regions of the human genome.	Genome Res	2007
17568002	Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution.	Genome Res	2007
17567994	Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions.	Genome Res	2007
17372197	The implications of alternative splicing in the ENCODE protein complement.	Proc Natl Acad Sci U S A	2007
16469109	Evaluation and selection of tandem repeat loci for a Brucella MLVA typing assay.	BMC Microbiology	2006
16925838	GENCODE: producing a reference annotation for ENCODE.	Genome Biol	2006
16925836	EGASP: the human ENCODE Genome Annotation Assessment Project.	Genome Biol	2006
14715089	Identification of polymorphic tandem repeats by direct comparison of genome sequence from different bacterial strains: a web-based resource.	BMC Bioinformatics	2004
15583305	Variable number of tandem repeats in Salmonella enterica subsp. enterica for typing purposes.	Journal of Clinical Microbiology	2004
12695323	Predicting human minisatellite polymorphism.	Genome Research	2003
12456266	High resolution, on-line identification of strains from the Mycobacterium tuberculosis complex based on tandem repeat typing.	BMC Microbiology	2002
11299044	A tandem repeats database for bacterial genomes: application to the genotyping of Yersinia pestis and Bacillus anthracis.	BMC Microbiology	2001
10899139	Minisatellites: mutability and genome architecture.	Genome Research	2000