Author details

Full Name

Robert F Murphy

Affiliation

Carnegie Mellon University

ORCID

Career Start Year

1975

Papers

169

H Index

Expertise

CM4AI Collaborator

Emma Lundberg (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36630324	Basal body organization and cell geometry during the cell cycle in <i>Tetrahymena thermophila</i>.	Mol Biol Cell	2023
36515991	Evaluation of cell segmentation methods without reference segmentations.	Mol Biol Cell	2023
36630324	Basal body organization and cell geometry during the cell cycle in <i>Tetrahymena thermophila</i>.	Mol Biol Cell	2023
37503045	Five inhibitory receptors display distinct vesicular distributions in T cells.	bioRxiv	2023
37503045	Five inhibitory receptors display distinct vesicular distributions in T cells.	bioRxiv	2023
36515991	Evaluation of cell segmentation methods without reference segmentations.	Mol Biol Cell	2023
36264139	Improving and evaluating deep learning models of cellular organization.	Bioinformatics	2022
36264139	Improving and evaluating deep learning models of cellular organization.	Bioinformatics	2022
32935893	Consistency and variation of protein subcellular location annotations.	Proteins	2021
33983377	Evaluation of categorical matrix completion algorithms: toward improved active learning for drug discovery.	Bioinformatics	2021
32935893	Consistency and variation of protein subcellular location annotations.	Proteins	2021
33237849	Quantifying the roles of space and stochasticity in computer simulations for cell biology and cellular biochemistry.	Mol Biol Cell	2021
33983377	Evaluation of categorical matrix completion algorithms: toward improved active learning for drug discovery.	Bioinformatics	2021
33237849	Quantifying the roles of space and stochasticity in computer simulations for cell biology and cellular biochemistry.	Mol Biol Cell	2021
32934075	PD-1 suppresses the maintenance of cell couples between cytotoxic T cells and target tumor cells within the tumor.	Sci Signal	2020
31774723	Image-derived models of cell organization changes during differentiation and drug treatments.	Mol Biol Cell	2020
31722369	Learning complex subcellular distribution patterns of proteins via analysis of immunohistochemistry images.	Bioinformatics	2020
32934075	PD-1 suppresses the maintenance of cell couples between cytotoxic T cells and target tumor cells within the tumor.	Sci Signal	2020
31722369	Learning complex subcellular distribution patterns of proteins via analysis of immunohistochemistry images.	Bioinformatics	2020
31774723	Image-derived models of cell organization changes during differentiation and drug treatments.	Mol Biol Cell	2020
30535313	Evaluation of methods for generative modeling of cell and nuclear shape.	Bioinformatics	2019
31663508	Transient protein accumulation at the center of the T cell antigen-presenting cell interface drives efficient IL-2 secretion.	Elife	2019
32457940	Integration of Heterogeneous Experimental Data Improves Global Map of Human Protein Complexes.	ACM BCB	2019
30535313	Evaluation of methods for generative modeling of cell and nuclear shape.	Bioinformatics	2019
30689627	Learning the sequence of influenza A genome assembly during viral replication using point process models and fluorescence in situ hybridization.	PLoS Comput Biol	2019
30945250	CellOrganizer: Learning and Using Cell Geometries for Spatial Cell Simulations.	Methods Mol Biol	2019
31663508	Transient protein accumulation at the center of the T cell antigen-presenting cell interface drives efficient IL-2 secretion.	Elife	2019
32457940	Integration of Heterogeneous Experimental Data Improves Global Map of Human Protein Complexes.	ACM BCB	2019
30945250	CellOrganizer: Learning and Using Cell Geometries for Spatial Cell Simulations.	Methods Mol Biol	2019
30689627	Learning the sequence of influenza A genome assembly during viral replication using point process models and fluorescence in situ hybridization.	PLoS Comput Biol	2019
29254944	Conserved non-AUG uORFs revealed by a novel regression analysis of ribosome profiling data.	Genome Res	2018
30177974	Learning Generative Models of Tissue Organization with Supervised GANs.	IEEE Winter Conf Appl Comput Vis	2018
29254944	Conserved non-AUG uORFs revealed by a novel regression analysis of ribosome profiling data.	Genome Res	2018
30177974	Learning Generative Models of Tissue Organization with Supervised GANs.	IEEE Winter Conf Appl Comput Vis	2018
28881992	Image-based spatiotemporal causality inference for protein signaling networks.	Bioinformatics	2017
28453381	Degradation of protein translation machinery by amino acid starvation-induced macroautophagy.	Autophagy	2017
28881992	Image-based spatiotemporal causality inference for protein signaling networks.	Bioinformatics	2017
28255716	Systems Imaging of the Immune Synapse.	Methods Mol Biol	2017
28245335	A method for characterizing phenotypic changes in highly variable cell populations and its application to high content screening of Arabidopsis thaliana protoplasts.	Cytometry A	2017
28093501	Discrete cytosolic macromolecular BRAF complexes exhibit distinct activities and composition.	EMBO J	2017
28255716	Systems Imaging of the Immune Synapse.	Methods Mol Biol	2017
28453381	Degradation of protein translation machinery by amino acid starvation-induced macroautophagy.	Autophagy	2017
28245335	A method for characterizing phenotypic changes in highly variable cell populations and its application to high content screening of Arabidopsis thaliana protoplasts.	Cytometry A	2017
28093501	Discrete cytosolic macromolecular BRAF complexes exhibit distinct activities and composition.	EMBO J	2017
26840049	Active machine learning-driven experimentation to determine compound effects on protein patterns.	Elife	2016
26845334	Unbiased Rare Event Sampling in Spatial Stochastic Systems Biology Models Using a Weighted Ensemble of Trajectories.	PLoS Comput Biol	2016
26840049	Active machine learning-driven experimentation to determine compound effects on protein patterns.	Elife	2016
27095595	Computational spatiotemporal analysis identifies WAVE2 and cofilin as joint regulators of costimulation-mediated T cell actin dynamics.	Sci Signal	2016
27327612	Point process models for localization and interdependence of punctate cellular structures.	Cytometry A	2016
26484733	Building cell models and simulations from microscope images.	Methods	2016

1 - 50 of 338

Jitin Singla

Indian Institute of Technology Roorkee

Career Start Year 2015

Number of shared co-authors 0

Loic A Royer

Center for Systems Biology Dresden

Career Start Year 2008

Number of shared co-authors 1

Kevin Smith

KTH Royal Institute of Technology

Career Start Year 2008

Number of shared co-authors 3

Bernd Bodenmiller

University of Zurich

Career Start Year 2005

Number of shared co-authors 2

Pekka Ruusuvuori

Institute of Biomedicine, University of Turku

Career Start Year 2005

Number of shared co-authors 0

Daniel Sage

Ecole Polytechnique Federale de Lausanne (EPFL)

Career Start Year 2004

Number of shared co-authors 1

Anne E Carpenter

Broad Institute of MIT and Harvard

Career Start Year 2004

Number of shared co-authors 3

Christian Tischer

Center for Bioimage Analysis

Career Start Year 2003

Number of shared co-authors 1

Jay R Unruh

Stowers Institute for Medical Research

Career Start Year 2003

Number of shared co-authors 0

Ge Yang

College of Chemistry, Sichuan University

Career Start Year 2003

Number of shared co-authors 0

Vibor Laketa

Heidelberg University Hospital

Career Start Year 2002

Number of shared co-authors 4

Carolina W??hlby

Uppsala University

Career Start Year 2002

Number of shared co-authors 1

Steven J Altschuler

Department of Pharmaceutical Chemistry, University of California san francisco

Career Start Year 2001

Number of shared co-authors 0

Lani F Wu

Department of Pharmaceutical Chemistry, University of California san francisco

Career Start Year 2001

Number of shared co-authors 0

Christophe Zimmer

Institut Pasteur, Universite Paris Cite, France Institut Pasteur

Career Start Year 2000

Number of shared co-authors 1

Thomas Walter

PSL University

Career Start Year 2000

Number of shared co-authors 2

Lucas Pelkmans

University of Zurich

Career Start Year 1999

Number of shared co-authors 1

Roland Eils

Berlin Institute of Health (BIH) and Charite

Career Start Year 1995

Number of shared co-authors 4

Jan Ellenberg

Institute of Child Health and Human Development

Career Start Year 1995

Number of shared co-authors 6

Jean-Karim H??rich??

University of California san francisco

Career Start Year 1994

Number of shared co-authors 3

Franck Perez

Institut Curie, PSL Research University, Sorbonne Universite, CNRS

Career Start Year 1992

Number of shared co-authors 2

Lee Kamentsky

Picower Institute for Learning and Memory, Massachusetts Institute of Technology

Career Start Year 1991

Number of shared co-authors 0

Nico Stuurman

University of California san francisco

Career Start Year 1989

Number of shared co-authors 1

Garry P Nolan

Stanford University School of Medicine

Career Start Year 1985

Number of shared co-authors 10

Jason R Swedlow

University of Dundee

Career Start Year 1984

Number of shared co-authors 3

James G McNally

Institute for Soft Matter and Functional Materials

Career Start Year 1983

Number of shared co-authors 0

Thomas J Deerinck

National Center for Microscopy and Imaging Research, University of California

Career Start Year 1982

Number of shared co-authors 1

Rohan D Teasdale

The University of Queensland

Career Start Year 1979

Number of shared co-authors 0

Peter Horvath

Institute of Biochemistry, Biological Research Centre

Career Start Year 1977

Number of shared co-authors 1

Brian D Slaughter

Stowers Institute for Medical Research

Career Start Year 1974

Number of shared co-authors 0

row(s) 1 - 30 of 30

Xiongtao Ruan

Co-authored papers 9

Charles R Cantor

Co-authored papers 9

Michael V Boland

Harvard Medical School

Co-authored papers 8

Gustavo K Rohde

University of Virginia

Co-authored papers 8

Justin Y Newberg

Foundation Medicine Inc.

Co-authored papers 7

Jieyue Li

Center for Bioimage Informatics, Carnegie Mellon University

Co-authored papers 6

Aabid Shariff

Carnegie Mellon University

Co-authored papers 6

Timothy D Majarian

Co-authored papers 4

Emma Lundberg (CM4AI)

Stanford University

Co-authored papers 4

Paul Verkade

Co-authored papers 4

Mathias Uhl??n

KTH Royal Institute of Technology

Co-authored papers 3

Devin P Sullivan

KTH - Royal Institute of Technology

Co-authored papers 3

Arvind Rao

University of Michigan-Ann Arbor

Co-authored papers 3

Ziv Bar-Joseph

Carnegie Mellon University

Co-authored papers 3

James C S Wood

Comprehensive Cancer Center

Co-authored papers 2

Robert C Leif

Coulter Corporation

Co-authored papers 2

Robert A Preston

Co-authored papers 2

Mia K Markey

The University of Texas at Austin

Co-authored papers 2

William R Pearson

University of Virginia

Co-authored papers 1

Ivan Cao-Berg

Co-authored papers 1

Jens S Andersen

University of Southern Denmark

Co-authored papers 1

Ryan R Brinkman

University of British Columbia

Co-authored papers 1

Vasanth R Singan

US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory

Co-authored papers 1

Ghislain M C Bonamy

Prestige BioPharma Ltd

Co-authored papers 1

Alan Rick Horwitz

Allen Institute for Cell Science

Co-authored papers 1

Wayne A Moore

Stanford University School of Medicine

Co-authored papers 1

Susanne Heynen-Genel

Cancer Center, Sanford Burnham Prebys Medical Discovery Institute

Co-authored papers 1

Joshua LaBaer

Biodesign Institute, Arizona State University

Co-authored papers 1

Damir Sudar

Co-authored papers 1

Jeremy C Simpson

UCD Conway Institute of Biomolecular and Biomedical Science

Co-authored papers 1

1 - 30

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