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Author Details

Peter Cimermancic
Verily Life Sciences LLC
2011
32
27
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37926422An End-to-End Platform for Digital Pathology Using Hyperspectral Autofluorescence Microscopy and Deep Learning-Based Virtual Histology.Mod Pathol2024
34400666Comparative analysis of machine learning approaches to classify tumor mutation burden in lung adenocarcinoma using histopathology images.Sci Rep2021
33351797Expansion of RiPP biosynthetic space through integration of pan-genomics and machine learning uncovers a novel class of lanthipeptides.PLoS Biol2020
33303586Genetic interaction mapping informs integrative structure determination of protein complexes.Science2020
31133761High-quality MS/MS spectrum prediction for data-dependent and data-independent acquisition data analysis.Nat Methods2019
28821611The proteasome-interacting Ecm29 protein disassembles the 26S proteasome in response to oxidative stress.J Biol Chem2017
28292943Molecular Details Underlying Dynamic Structures and Regulation of the Human 26S Proteasome.Mol Cell Proteomics2017
29182146Immunoproteasome functions explained by divergence in cleavage specificity and regulation.Elife2017
29211988Assessing Exhaustiveness of Stochastic Sampling for Integrative Modeling of Macromolecular Structures.Biophys J2017
26854760CryptoSite: Expanding the Druggable Proteome by Characterization and Prediction of Cryptic Binding Sites.J Mol Biol2016
25754993Scoring Large-Scale Affinity Purification Mass Spectrometry Datasets with MiST.Curr Protoc Bioinformatics2015
26340423Architecture of the Human and Yeast General Transcription and DNA Repair Factor TFIIH.Mol Cell2015
26173699IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites.mBio2015
25689339Erratum: Covalent docking of large libraries for the discovery of chemical probes.Nat Chem Biol2015
25171412Molecular architecture of the 40Sâ¿¿eIF1â¿¿eIF3 translation initiation complex.Cell2014
28898626Molecular Architecture of the 40Sâ¿¿eIF1â¿¿eIF3 Translation Initiation Complex.Cell2014
25474254A systematic computational analysis of biosynthetic gene cluster evolution: lessons for engineering biosynthesis.PLoS Comput Biol2014
25263219Discovery and characterization of gut microbiota decarboxylases that can produce the neurotransmitter tryptamine.Cell Host Microbe2014
25275790Affinity purification-mass spectrometry and network analysis to understand protein-protein interactions.Nat Protoc2014
25215495A systematic analysis of biosynthetic gene clusters in the human microbiome reveals a common family of antibiotics.Cell2014
25344815Covalent docking of large libraries for the discovery of chemical probes.Nat Chem Biol2014
25036635Insights into secondary metabolism from a global analysis of prokaryotic biosynthetic gene clusters.Cell2014
25073740Molecular architecture and function of the SEA complex, a modulator of the TORC1 pathway.Mol Cell Proteomics2014
24197012High-resolution network biology: connecting sequence with function.Nat Rev Genet2013
22174317Host cell interactome of HIV-1 Rev includes RNA helicases involved in multiple facets of virus production.Mol Cell Proteomics2012
20708689Purification and characterization of HIV-human protein complexes.Methods2011
21672958antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences.Nucleic Acids Res2011
21602791SNX27 mediates retromer tubule entry and endosome-to-plasma membrane trafficking of signalling receptors.Nat Cell Biol2011
21983601A mass spectrometry-guided genome mining approach for natural product peptidogenomics.Nat Chem Biol2011
22190034Global landscape of HIV-human protein complexes.Nature2011
22190037Vif hijacks CBF-β to degrade APOBEC3G and promote HIV-1 infection.Nature2011
22012619The Cyclin K/Cdk12 complex maintains genomic stability via regulation of expression of DNA damage response genes.Genes Dev2011
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Collaborators

Andrej Sali (CM4AI)
University of California San Francisco
Co-authored papers 16
Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 8
Michael A Fischbach
Stanford University
Co-authored papers 8
Riccardo Pellarin
CNRS UMR 5086 and Universite Claude Bernard Lyon 1
Co-authored papers 5
Stefanie J??ger
Institute of Molecular Biosciences, Goethe University Frankfurt
Co-authored papers 4
Marnix H Medema
Wageningen University
Co-authored papers 4
Ruedi Aebersold
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 3
James S Fraser
University of California san francisco
Co-authored papers 3
Charles S Craik
Department of Pharmaceutical Chemistry, University of California san francisco
Co-authored papers 3
John H Morris
University of California san francisco
Co-authored papers 3
Natali Gulbahce
Complete Genomics Inc.
Co-authored papers 3
Jeffrey R Johnson
Gladstone Institutes
Co-authored papers 3
Eriko Takano
Manchester Institute of Biotechnology, University of Manchester
Co-authored papers 3
Alan D Frankel
University of California san francisco
Co-authored papers 2
Jack Taunton
University of California san francisco
Co-authored papers 2
Nir London
The Weizmann Institute of Science
Co-authored papers 2
Scott D Rychnovsky
University of California irvine
Co-authored papers 2
Erik Verschueren
University of California San Francisco
Co-authored papers 2
Clinton Yu
University of California Irvine
Co-authored papers 2
Suyang Zhang
Li Ka Shing Institute of Health Sciences, Chinese University of Hong Kong
Co-authored papers 2
Brian K Shoichet
Department of Pharmaceutical Chemistry, University of California san francisco
Co-authored papers 2
Iv??n D'Orso
University of Texas Southwestern Medical Center
Co-authored papers 2
Alexander S Huszagh
University of California irvine
Co-authored papers 2
Nenad Ban
Institute of Molecular Biology and Biophysics, ETH Zurich
Co-authored papers 2
Anthony J O'Donoghue
Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California
Co-authored papers 2
Tanja Schaefer
Institute for Molecular Biology and Biophysics
Co-authored papers 2
Jon Clardy
Harvard Medical School, Blavatnik Institute
Co-authored papers 2
Cathal Mahon
Denali Therapeutics Inc.
Co-authored papers 2
Laura C Wieland Brown
Indiana University
Co-authored papers 2
Xiaorong Wang
University of California Irvine
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