Author details

Full Name

Florencio Pazos

Affiliation

National Centre for Biotechnology (CNB-CSIC)

ORCID

Career Start Year

1997

Papers

H Index

Expertise

CM4AI Collaborator

Andrej Sali (CM4AI)

PMID	Paper Title	Journal Title	Published Year
37374967	Effects of Major Families of Modulators on Performances and Gastrointestinal Microbiota of Poultry, Pigs and Ruminants: A Systematic Approach.	Microorganisms	2023
37178003	MBROLE3: improved functional enrichment of chemical compounds for metabolomics data analysis.	Nucleic Acids Res	2023
37107700	PMIDigest: Interactive Review of Large Collections of PubMed Entries to Distill Relevant Information.	Genes (Basel)	2023
35662459	CoMent: Relationships Between Biomedical Concepts Inferred From the Scientific Literature.	J Mol Biol	2022
35741843	Network-Based Methods for Approaching Human Pathologies from a Phenotypic Point of View.	Genes (Basel)	2022
35534114	Computational prediction of protein functional sites-Applications in biotechnology and biomedicine.	Adv Protein Chem Struct Biol	2022
32778951	Systematic identification of genetic systems associated with phenotypes in patients with rare genomic copy number variations.	Hum Genet	2021
34940354	Prediction of Protein Sites and Physicochemical Properties Related to Functional Specificity.	Bioengineering (Basel)	2021
34118870	Predicting biological pathways of chemical compounds with a profile-inspired approach.	BMC Bioinformatics	2021
33135068	Protein residues determining interaction specificity inÂ paralogous families.	Bioinformatics	2021
33001999	Phenotype-genotype comorbidity analysis of patients with rare disorders provides insight into their pathological and molecular bases.	PLoS Genet	2020
33376807	Concomitant prediction of environmental fate and toxicity of chemical compounds.	Biol Methods Protoc	2020
29351590	Characteristics and evolution of the ecosystem of software tools supporting research in molecular biology.	Brief Bioinform	2019
32395629	Applications of molecular networks in biomedicine.	Biol Methods Protoc	2019
31349743	WeReview: CRISPR Tools-Live Repository of Computational Tools for Assisting CRISPR/Cas Experiments.	Bioengineering (Basel)	2019
30844057	Bacterial Feature Finder (BaFF)-a system for extracting features overrepresented in sets of prokaryotic organisms.	Bioinformatics	2019
29482506	Effect of the sequence data deluge on the performance of methods for detecting protein functional residues.	BMC Bioinformatics	2018
30486775	Automatic detection of genomic regions with informative epigenetic patterns.	BMC Genomics	2018
27920218	A Molecular Basis for the Presentation of Phosphorylated Peptides by HLA-B Antigens.	Mol Cell Proteomics	2017
28715999	Factors affecting interactome-based prediction of human genes associated with clinical signs.	BMC Bioinformatics	2017
26141829	Practical analysis of specificity-determining residues in protein families.	Brief Bioinform	2016
27115644	Functional Analysis of Metabolomics Data.	Methods Mol Biol	2016
27166368	Breaking-Cas-interactive design of guide RNAs for CRISPR-Cas experiments for ENSEMBL genomes.	Nucleic Acids Res	2016
26861820	Characterization of clinical signs in the human interactome.	Bioinformatics	2016
27084944	MBROLE 2.0-functional enrichment of chemical compounds.	Nucleic Acids Res	2016
26995712	Rare disease relations through common genes and protein interactions.	Mol Cell Probes	2016
25717190	Detection of significant protein coevolution.	Bioinformatics	2015
26155933	Protein functional features are reflected in the patterns of mRNA translation speed.	BMC Genomics	2015
24419381	Structural basis for the broad specificity of a new family of amino-acid racemases.	Acta Crystallogr D Biol Crystallogr	2014
25364721	Practical aspects of protein co-evolution.	Front Cell Dev Biol	2014
24997606	Rational design of a ligand-based antagonist of jasmonate perception.	Nat Chem Biol	2014
24420718	Molecular determinants of the ATP hydrolysis asymmetry of the CCT chaperonin complex.	Proteins	2014
23063930	Tools for the functional interpretation of metabolomic experiments.	Brief Bioinform	2013
24062761	Protein intrinsic disorder in plants.	Front Plant Sci	2013
23720488	COPRED: prediction of fold, GO molecular function and functional residues at the domain level.	Bioinformatics	2013
23408995	Genome-wide analysis of protein disorder in Arabidopsis thaliana: implications for plant environmental adaptation.	PLoS One	2013
23458856	Emerging methods in protein co-evolution.	Nat Rev Genet	2013
23514233	Concomitant prediction of function and fold at the domain level with GO-based profiles.	BMC Bioinformatics	2013
23104128	Incorporating information on predicted solvent accessibility to the co-evolution-based study of protein interactions.	Mol Biosyst	2013
22171333	JDet: interactive calculation and visualization of function-related conservation patterns in multiple sequence alignments and structures.	Bioinformatics	2012
20506040	Genetic polymorphisms among C57BL/6 mouse inbred strains.	Transgenic Res	2011
21910884	Selection of organisms for the co-evolution-based study of protein interactions.	BMC Bioinformatics	2011
21326236	Towards the prediction of protein interaction partners using physical docking.	Mol Syst Biol	2011
21208985	MBRole: enrichment analysis of metabolomic data.	Bioinformatics	2011
19965879	Quantifying the biological significance of gene ontology biological processes--implications for the analysis of systems-wide data.	Bioinformatics	2010
21071648	Retraction.	Science	2010
20133844	Protein interactions and ligand binding: from protein subfamilies to functional specificity.	Proc Natl Acad Sci U S A	2010
20363731	Studying the co-evolution of protein families with the Mirrortree web server.	Bioinformatics	2010
20406431	Quantitative global studies of reactomes and metabolomes using a vectorial representation of reactions and chemical compounds.	BMC Syst Biol	2010
19241468	Gene ontology functional annotations at the structural domain level.	Proteins	2009

1 - 50 of 84

Marco Falda

University of Padova

Career Start Year 2012

Number of shared co-authors 7

Vera van Noort

Leiden University, Institute of Biology Leiden

Career Start Year 2003

Number of shared co-authors 2

Narcis Fernandez-Fuentes

Institute of Biological, Aberystwyth University

Career Start Year 2002

Number of shared co-authors 3

Silvio C E Tosatto

University of Padova

Career Start Year 2002

Number of shared co-authors 8

Mario Albrecht

Institute for Knowledge Discovery, Graz University of Technology

Career Start Year 2002

Number of shared co-authors 4

Dmitry Korkin

Worcester Polytechnic Institute

Career Start Year 2002

Number of shared co-authors 1

Julian Gough

Medical Research Council Laboratory of Molecular Biology

Career Start Year 2001

Number of shared co-authors 8

Kevin Bryson

University of Glasgow

Career Start Year 1999

Number of shared co-authors 7

Lars Juhl Jensen

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen

Career Start Year 1998

Number of shared co-authors 5

Pier Luigi Martelli

Department of Pharmacy and Biotechnology, University of Bologna

Career Start Year 1998

Number of shared co-authors 8

Dong Xu

University of Missouri

Career Start Year 1998

Number of shared co-authors 0

Iddo Friedberg

Iowa State University

Career Start Year 1997

Number of shared co-authors 7

Patrick Aloy

Institucio Catalana de Recerca i Estudis Avancats (ICREA)

Career Start Year 1997

Number of shared co-authors 5

Alex Bateman

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 1995

Number of shared co-authors 2

Ralf Zimmer

Ludwig-Maximilians-Universitat Munchen

Career Start Year 1995

Number of shared co-authors 0

Maria J Martin

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 1994

Number of shared co-authors 7

Erik L L Sonnhammer

Stockholm University

Career Start Year 1992

Number of shared co-authors 0

Martijn A Huynen

Radboud University Medical Centre Nijmegen

Career Start Year 1992

Number of shared co-authors 1

Miguel A Andrade-Navarro

Institute of Organismic and Molecular Evolution, Johannes Gutenberg University

Career Start Year 1991

Number of shared co-authors 3

Baldo Oliva

Universitat Pompeu Fabra

Career Start Year 1991

Number of shared co-authors 5

Paul D Thomas

University of Southern California

Career Start Year 1991

Number of shared co-authors 0

Jaap Heringa

VU University Amsterdam

Career Start Year 1991

Number of shared co-authors 1

Robert B Russell

Heidelberg University

Career Start Year 1991

Number of shared co-authors 4

Peer Bork

University of Wurzburg

Career Start Year 1989

Number of shared co-authors 6

Ramanathan Sowdhamini

Indian Institute of Science

Career Start Year 1989

Number of shared co-authors 1

Christine Orengo

University College London, Institute of Structural and Molecular Biology

Career Start Year 1989

Number of shared co-authors 10

Adam Godzik

University of California Riverside

Career Start Year 1987

Number of shared co-authors 6

Liisa Holm

Institute of Biotechnology, University of Helsinki

Career Start Year 1986

Number of shared co-authors 7

Amos Bairoch

University of Geneva

Career Start Year 1982

Number of shared co-authors 5

Chris Sander

Broad Institute of MIT and Harvard

Career Start Year 1979

Number of shared co-authors 4

row(s) 1 - 30 of 30

Alfonso Valencia

Josep Carreras Leukaemia Research Institute (IJC)

Co-authored papers 35

Burkhard Rost

Technical University of Munich (TUM)

Co-authored papers 6

Osvaldo Gra??a

Spanish National Cancer Research Centre-CNIO

Co-authored papers 4

Volker A Eyrich

Columbia University

Co-authored papers 4

Michael J E Sternberg

Imperial College London

Co-authored papers 4

Lluis Montoliu

National Centre for Biotechnology (CNB-CSIC)

Co-authored papers 3

Dariusz Przybylski

Howard Hughes Medical Institute, Brandeis University

Co-authored papers 3

Carles Pons

Co-authored papers 3

Mallur S Madhusudhan

Indian Institute of Science Education and Research Pune

Co-authored papers 2

Marc A Marti-Renom

Universitat Pompeu Fabra (UPF)

Co-authored papers 2

Javier De Las Rivas

Cancer Research Centre (IBMCC/CSIC/USAL/IBSAL)

Co-authored papers 2

Rita Casadio

Department of Pharmacy and Biotechnology, University of Bologna

Co-authored papers 2

Ingrid Y Y Koh

Columbia University Center for Computational Biology and Bioinformatics (C2B2)

Co-authored papers 2

Andrej Sali (CM4AI)

University of California San Francisco

Co-authored papers 2

Javier Ben??tez

Instituto de Salud Carlos III

Co-authored papers 1

Fernando Abaitua

Co-authored papers 1

Andras Fiser

Albert Einstein College of Medicine

Co-authored papers 1

Angela Del Pozo

Instituto de Genetica Medica y Molecular (INGEMM), Hospital Universitario La Paz

Co-authored papers 1

Albert J R Heck

Utrecht University

Co-authored papers 1

Roland L Dunbrack

Fox Chase Cancer Center

Co-authored papers 1

Diego Garrido-MartÃn

Co-authored papers 1

Narayanan Eswar

University of California at San Francisco

Co-authored papers 1

Michael L Tress

Spanish National Cancer Research Centre (CNIO)

Co-authored papers 1

Mark N Wass

University of Kent

Co-authored papers 1

Damien P Devos

Universidad Pablo de Olavide

Co-authored papers 1

1 - 25

Author Details

Column Actions

Recommended Authors

Collaborators