Author details

Full Name

Ricard Argelaguet

Affiliation

European Bioinformatics Institute (EMBL-EBI)

ORCID

Career Start Year

2018

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37365273	Gene regulatory network inference in the era of single-cell multi-omics.	Nat Rev Genet	2023
37624866	Curated single cell multimodal landmark datasets for R/Bioconductor.	PLoS Comput Biol	2023
34489600	Integration of spatial and single-cell transcriptomic data elucidates mouse organogenesis.	Nat Biotechnol	2022
36163261	Single-cell multi-omics profiling links dynamic DNA methylation to cell fate decisions during mouse early organogenesis.	Genome Biol	2022
35216671	8C-like cells capture the human zygotic genome activation program inÂ vitro.	Cell Stem Cell	2022
35027765	Identifying temporal and spatial patterns of variation from multimodal data using MEFISTO.	Nat Methods	2022
34353350	Community-wide hackathons to identify central themes in single-cell multi-omics.	Genome Biol	2021
33879195	scMET: Bayesian modeling of DNA methylation heterogeneity at single-cell resolution.	Genome Biol	2021
34433496	Author Correction: Community-wide hackathons to identify central themes in single-cell multi-omics.	Genome Biol	2021
33941931	Computational principles and challenges in single-cell data integration.	Nat Biotechnol	2021
32393329	MOFA+: a statistical framework for comprehensive integration of multi-modal single-cell data.	Genome Biol	2020
29472610	scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells.	Nat Commun	2018
29925568	Multi-Omics Factor Analysis-a framework for unsupervised integration of multi-omics data sets.	Mol Syst Biol	2018

1 - 13 of 13

Yan Wu

University of California

Career Start Year 2017

Number of shared co-authors 0

Rhonda Bacher

University of Florida

Career Start Year 2016

Number of shared co-authors 0

Lukas M Weber

Johns Hopkins Bloomberg School of Public Health

Career Start Year 2014

Number of shared co-authors 2

Qian Zhu

Boston Children's Hospital

Career Start Year 2013

Number of shared co-authors 3

Samuel L Wolock

Beth Israel Deaconess Medical Center

Career Start Year 2013

Number of shared co-authors 0

Jason D Buenrostro

Harvard University, Broad Institute of MIT and Harvard

Career Start Year 2010

Number of shared co-authors 2

Pavlo Lutsik

Catholic University (KU) Leuven

Career Start Year 2010

Number of shared co-authors 0

David Gomez-Cabrero

King Abdullah University of Science and Technology

Career Start Year 2010

Number of shared co-authors 7

Chongzhi Zang

Center for Public Health Genomics, University of Virginia

Career Start Year 2008

Number of shared co-authors 0

Matthias Farlik

CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences

Career Start Year 2007

Number of shared co-authors 0

Rahul Satija

Center for Genomics and Systems Biology, New York University

Career Start Year 2006

Number of shared co-authors 3

Altuna Akalin

Berlin Institute for Medical Systems Biology

Career Start Year 2006

Number of shared co-authors 1

Patrick Cahan

Johns Hopkins University

Career Start Year 2005

Number of shared co-authors 1

Jessica C Mar

Australian Institute for Bioengineering and Nanotechnology, University of Queensland

Career Start Year 2005

Number of shared co-authors 2

Andrew E Teschendorff

UCL Cancer Institute, University College London

Career Start Year 2005

Number of shared co-authors 2

Christoph Bock

CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences

Career Start Year 2005

Number of shared co-authors 3

Kun Zhang

China Pharmaceutical University

Career Start Year 2005

Number of shared co-authors 1

Kasper D Hansen

Johns Hopkins University School of Medicine

Career Start Year 2004

Number of shared co-authors 11

Zhandong Liu

Jan and Dan Duncan Neurological Research Institute at Texas Children's Hospital

Career Start Year 2003

Number of shared co-authors 0

Gerald Quon

University of California davis

Career Start Year 2003

Number of shared co-authors 0

Florian Markowetz

CRUK Cambridge Institute, University of Cambridge

Career Start Year 2003

Number of shared co-authors 1

Amos Tanay

Weizmann Institute of Science

Career Start Year 2001

Number of shared co-authors 4

Dana Pe'er

Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center

Career Start Year 2000

Number of shared co-authors 3

Christina Kendziorski

University of Wisconsin-Madison

Career Start Year 1999

Number of shared co-authors 0

Kai Tan

University of Pennsylvania

Career Start Year 1999

Number of shared co-authors 0

Mark D Robinson

University of Zurich

Career Start Year 1997

Number of shared co-authors 4

Fabian J Theis

Technical University of Munich

Career Start Year 1992

Number of shared co-authors 4

Holger Heyn

Barcelona Institute of Science and Technology, Spain Universitat Pompeu Fabra

Career Start Year 1988

Number of shared co-authors 2

Aviv Regev

Broad Institute of MIT and Harvard

Career Start Year 1987

Number of shared co-authors 6

Yuval Kluger

Yale University School of Medicine

Career Start Year 1984

Number of shared co-authors 0

row(s) 1 - 30 of 30

Oliver Stegle

Wellcome Sanger Institute

Co-authored papers 5

John C Marioni

Cancer Research UK Cambridge Institute, University of Cambridge

Co-authored papers 5

Wolf Reik

The Babraham Institute

Co-authored papers 4

Vincent J Carey

Brigham and Women's Hospital, Harvard Medical School

Co-authored papers 3

Aedin C Culhane

Dana-Farber Cancer Institute & Harvard School of Public Health

Co-authored papers 3

Dario Righelli

University of Padova

Co-authored papers 3

Vera Pancaldi

Universite de Toulouse, Inserm, CNRS, Universite Toulouse III-Paul Sabatier

Co-authored papers 2

Elana J Fertig

Johns Hopkins University School of Medicine

Co-authored papers 2

Susan Holmes

Stanford University

Co-authored papers 2

Matthew E Ritchie

The University of Melbourne

Co-authored papers 2

Ruben Dries

Boston University School of Medicine

Co-authored papers 2

Genevieve L Stein-O'Brien

Johns Hopkins School of Medicine

Co-authored papers 2

Kris Sankaran

University of Wisconsin - Madison, 1300 University Ave

Co-authored papers 2

Amrit Singh

St. Paul's Hospital, University of British Columbia

Co-authored papers 2

Berthold GÃ¶ttgens

Co-authored papers 2

Arshi Arora

Memorial Sloan Kettering Cancer Center

Co-authored papers 2

Casey S Greene

Dartmouth College Geisel School of Medicine, Princeton University, University of Colorado Anschutz Medical Campus, University of Pennsylvania Perelman School of Medicine

Co-authored papers 2

Michael I Love

University of North Carolina at Chapel Hill

Co-authored papers 2

Ayshwarya Subramanian

Broad Institute of MIT and Harvard

Co-authored papers 2

Pratheepa Jeganathan

McMaster University

Co-authored papers 2

Joshua D Welch

University of Michigan ann arbor