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Author Details

John H Doonan
University of Copenhagen
1985
164
48
PMIDPaper TitleJournal TitlePublished Year
37235034Editorial: State-of-the-art technology and applications in crop phenomics, volume II.Front Plant Sci2023
37798274Transcriptome profiling of Fraxinus excelsior genotypes infested by emerald ash borer.Sci Data2023
34792806Elucidating drought responsive networks in tef (Eragrostis tef) using phenomic and metabolomic approaches.Physiol Plant2022
35383351Molecular and physiological responses to desiccation indicate the abscisic acid pathway is conserved in the peat moss, Sphagnum.J Exp Bot2022
35171969Genetic architecture of variation in Arabidopsis thaliana rosettes.PLoS One2022
34865980Tef: a tiny grain with enormous potential.Trends Plant Sci2022
33289112Total FLC transcript dynamics from divergent paralogue expression explains flowering diversity in Brassica napus.New Phytol2021
33898978A deep learning-integrated micro-CT image analysis pipeline for quantifying rice lodging resistance-related traits.Plant Commun2021
33815444A Comparison of Differential Gene Expression in Response to the Onset of Water Stress Between Three Hybrid Brachiaria Genotypes.Front Plant Sci2021
33841454Deep Segmentation of Point Clouds of Wheat.Front Plant Sci2021
33921967Development of an Image Analysis Pipeline to Estimate Sphagnum Colony Density in the Field.Plants (Basel)2021
33920019The Transcriptional Adaptor Protein ADA3a Modulates Flowering of <i>Arabidopsis thaliana</i>.Cells2021
33808796Metabolomic Variation Aligns with Two Geographically Distinct Subpopulations of <i>Brachypodium Distachyon</i> before and after Drought Stress.Cells2021
33777185Interspecific and intraspecific phenotypic diversity for drought adaptation in bioenergy <i>Arundo</i> species.Glob Change Biol Bioenergy2021
33917018Allotetraploidization in <i>Brachypodium</i> May Have Led to the Dominance of One Parent's Metabolome in Germinating Seeds.Cells2021
35005660<i>Brenneria goodwinii</i> growth <i>in vitro</i> is improved by competitive interactions with other bacterial species associated with Acute Oak Decline.Curr Res Microb Sci2021
34675958Editorial: State-of-the-Art Technology and Applications in Crop Phenomics.Front Plant Sci2021
34762229Untargeted Metabolomic Profiling Reveals Variation in Metabolites Associated with Nutritional Values in Tef Accessions.Plant Foods Hum Nutr2021
34094805<i>Gibbsiella quercinecans</i> as new pathogen involved in bacterial canker of Russian olive.3 Biotech2021
32129846DeepPod: a convolutional neural network based quantification of fruit number in Arabidopsis.Gigascience2020
32033195In Vitro Tissue Culture in <i>Brachypodium</i>: Applications and Challenges.Int J Mol Sci2020
31932140Survival of Brenneria goodwinii and Gibbsiella quercinecans, associated with acute oak decline, in rainwater and forest soil.Syst Appl Microbiol2020
31955437Mechanical stimulation in Brachypodium distachyon: Implications for fitness, productivity, and cell wall properties.Plant Cell Environ2020
32047050CDKG1 Is Required for Meiotic and Somatic Recombination Intermediate Processing in Arabidopsis.Plant Cell2020
31981735Crop Phenomics and High-Throughput Phenotyping: Past Decades, Current Challenges, and Future Perspectives.Mol Plant2020
31949177Genotypic variations in leaf and whole-plant water use efficiencies are closely related in bread wheat genotypes under well-watered and water-limited conditions during grain filling.Sci Rep2020
32038671Thermo-Sensitive Alternative Splicing of <i>FLOWERING LOCUS M</i> Is Modulated by Cyclin-Dependent Kinase G2.Front Plant Sci2020
33362820Semi-Automated Field Plot Segmentation From UAS Imagery for Experimental Agriculture.Front Plant Sci2020
33240303A Functional Kinase Is Necessary for Cyclin-Dependent Kinase G1 (CDKG1) to Maintain Fertility at High Ambient Temperature in <i>Arabidopsis</i>.Front Plant Sci2020
32933168Genetic and Methylome Variation in Turkish <i>Brachypodium Distachyon</i> Accessions Differentiate Two Geographically Distinct Subpopulations.Int J Mol Sci2020
32728126Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors.Nat Commun2020
32811286Host-microbiota-insect interactions drive emergent virulence in a complex tree disease.Proc Biol Sci2020
32508865A CRISPR/Cas9-Based Mutagenesis Protocol for <i>Brachypodium distachyon</i> and Its Allopolyploid Relative, <i>Brachypodium hybridum</i>.Front Plant Sci2020
32499808Image-Based Assessment of Drought Response in Grapevines.Front Plant Sci2020
30380099Combining high-throughput micro-CT-RGB phenotyping and genome-wide association study to dissect the genetic architecture of tiller growth in rice.J Exp Bot2019
30868647μCT trait analysis reveals morphometric differences between domesticated temperate small grain cereals and their wild relatives.Plant J2019
30625111Genomic analysis of bacteria in the Acute Oak Decline pathobiome.Microb Genom2019
29186578The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics.Nucleic Acids Res2018
30038630Functional Mapping of Quantitative Trait Loci (QTLs) Associated With Plant Performance in a Wheat MAGIC Mapping Population.Front Plant Sci2018
29875783Editorial: Phenomics.Front Plant Sci2018
29846775The histone acetyltransferase GCN5 and the transcriptional coactivator ADA2b affect leaf development and trichome morphogenesis in Arabidopsis.Planta2018
30774947Root imaging showing comparisons in root distribution and ontogeny in novel <i>Festulolium</i> populations and closely related perennial ryegrass varieties.Food Energy Secur2018
30501101Cell Wall Epitopes and Endoploidy as Reporters of Embryogenic Potential in <i>Brachypodium Distachyon</i> Callus Culture.Int J Mol Sci2018
29719548Novel Digital Features Discriminate Between Drought Resistant and Drought Sensitive Rice Under Controlled and Field Conditions.Front Plant Sci2018
29378627Integrated multi-omic analysis of host-microbiota interactions in acute oak decline.Microbiome2018
29602264The cyclin-dependent kinase G group defines a thermo-sensitive alternative splicing circuit modulating the expression of Arabidopsis ATU2AF65A.Plant J2018
29028005Microbiome and infectivity studies reveal complex polyspecies tree disease in Acute Oak Decline.ISME J2018
27650449Natural Variation in Brachypodium Links Vernalization and Flowering Time Loci as Major Flowering Determinants.Plant Physiol2017
29375593Editorial: Plant Phenotyping and Phenomics for Plant Breeding.Front Plant Sci2017
29225022The Mitotic Function of Augmin Is Dependent on Its Microtubule-Associated Protein Subunit EDE1 in Arabidopsis thaliana.Curr Biol2017
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Collaborators

Institute of Organismic and Molecular Evolution, Johannes Gutenberg University
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Institute of Biological, Aberystwyth University
Co-authored papers 2
Broad Institute of MIT and Harvard
Co-authored papers 2
Macquarie University
Co-authored papers 1
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Oregon State University
Co-authored papers 1
University of Washington
Co-authored papers 1
University of Cambridge
Co-authored papers 1
Oregon State University
Co-authored papers 1
US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 1
Oregon State University
Co-authored papers 1
Co-authored papers 1
University at Buffalo
Co-authored papers 1
Co-authored papers 1
University of Tennessee Health Science Center
Co-authored papers 1
Oregon State University
Co-authored papers 1
Oregon Health and Science University
Co-authored papers 1
Institut Pasteur, Universite Paris Cite
Co-authored papers 1
Co-authored papers 1
Co-authored papers 1
University of British Columbia
Co-authored papers 1
Institute of Cardiovascular Science, University College London
Co-authored papers 1
US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 1
Chalmers University of Technology
Co-authored papers 1
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Oregon State University
Co-authored papers 1
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MRC Institute of Genetics and Molecular Medicine at the University of Edinburgh
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