Author details

Full Name

Stefan Janssen

Affiliation

ORCID

Career Start Year

2008

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
33727399	EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets.	mSystems	2021
33743779	Insights into the genome and secretome of Fusarium metavorans DSM105788 by cultivation on agro-residual biomass and synthetic nutrient sources.	Biotechnol Biofuels	2021
33244003	Vitamin D metabolites and the gut microbiome in older men.	Nat Commun	2020
32047925	The effect of legume supplementation on the gut microbiota in rural Malawian infants aged 6 to 12 months.	Am J Clin Nutr	2020
32043464	A gut bacterial amyloid promotes Î±-synuclein aggregation and motor impairment in mice.	Elife	2020
32214244	Microbiome analyses of blood and tissues suggest cancer diagnostic approach.	Nature	2020
31341288	Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.	Nat Biotechnol	2019
31792218	Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea.	Nat Commun	2019
31189482	The impact of skin care products on skin chemistry and microbiome dynamics.	BMC Biol	2019
30813950	Environmental toxicants in breast milk of Norwegian mothers and gut bacteria composition and metabolites in their infants at 1 month.	Microbiome	2019
31399723	Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.	Nat Biotechnol	2019
30832730	Assessing taxonomic metagenome profilers with OPAL.	Genome Biol	2019
29577086	KatharoSeq Enables High-Throughput Microbiome Analysis from Low-Biomass Samples.	mSystems	2018
30275573	Qiita: rapid, web-enabled microbiome meta-analysis.	Nat Methods	2018
29719869	Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information.	mSystems	2018
29487294	Creating a 3D microbial and chemical snapshot of a human habitat.	Sci Rep	2018
29795809	American Gut: an Open Platform for Citizen Science Microbiome Research.	mSystems	2018
29088705	A communal catalogue reveals Earth's multiscale microbial diversity.	Nature	2017
28967888	Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.	Nat Methods	2017
27912057	Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's Disease.	Cell	2016
26017195	Ambivalent covariance models.	BMC Bioinformatics	2015
25273103	The RNA shapes studio.		2015
24639162	Abstract shape analysis of RNA.	Methods in Molecular Biology	2014
23355290	Bellman's GAP--a language and compiler for dynamic programming in sequence analysis.		2013
22051375	Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction.	BMC Bioinformatics	2011
20080511	Faster computation of exact RNA shape probabilities.		2010
20398411	A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti.	BMC Genomics	2010
18312625	Shape based indexing for faster search of RNA family databases.	BMC Bioinformatics	2008