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Author Details

Kevin A T Silverstein
Minnesota Supercomputing Institute, University of Minnesota
2000
72
33
PMIDPaper TitleJournal TitlePublished Year
34897429The genome of the zebra mussel, Dreissena polymorpha: a resource for comparative genomics, invasion genetics, and biocontrol.G3 (Bethesda)2022
34488767Correction to: Polymorphisms within the Telomerase Reverse Transcriptase gene (TERT) in four breeds of dogs selected for difference in lifespan and cancer susceptibility.BMC Vet Res2021
34465774The use of shared haplotype length information for pedigree reconstruction in asexually propagated outbreeding crops, demonstrated for apple and sweet cherry.Hortic Res2021
33205138The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems.Patterns (N Y)2020
32051026Maize genomes to fields (G2F): 2014-2017 field seasons: genotype, phenotype, climatic, soil, and inbred ear image datasets.BMC Res Notes2020
30664233Nodule-specific PLAT domain proteins are expanded in the Medicago lineage and required for nodulation.New Phytol2019
31699975Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation.Nat Commun2019
31744914Gene Regulation Shifts Shed Light on Fungal Adaption in Plant Biomass Decomposers.mBio2019
30891420Next generation sequencing for clinical diagnostics: Five year experience of an academic laboratory.Mol Genet Metab Rep2019
31171611Complete Genome Sequence of Hospital-Acquired Methicillin-Resistant Staphylococcus aureus Strain WCUH29.Microbiol Resour Announc2019
29437708Expression of Adipocyte/Macrophage Fatty Acid-Binding Protein in Tumor-Associated Macrophages Promotes Breast Cancer Progression.Cancer Res2018
28797229ODG: Omics database generator - a tool for generating, querying, and analyzing multi-omics comparative databases to facilitate biological understanding.BMC Bioinformatics2017
28473535Androgen Receptor Variant AR-V9 Is Coexpressed with AR-V7 in Prostate Cancer Metastases and Predicts Abiraterone Resistance.Clin Cancer Res2017
28347275Exploring structural variation and gene family architecture with De Novo assemblies of 15 Medicago genomes.BMC Genomics2017
28369050Antagonism of B cell enhancer networks by STAT5 drives leukemia and poor patient survival.Nat Immunol2017
28778149Strategies for optimizing BioNano and Dovetail explored through a second reference quality assembly for the legume model, Medicago truncatula.BMC Genomics2017
28724409Hybrid assembly with long and short reads improves discovery of gene family expansions.BMC Genomics2017
26904939Insertional Mutagenesis Identifies a STAT3/Arid1b/β-catenin Pathway Driving Neurofibroma Initiation.Cell Rep2016
27597741CNV-RF Is a Random Forest-Based Copy Number Variation Detection Method Using Next-Generation Sequencing.J Mol Diagn2016
27374913Augmenting Chinese hamster genome assembly by identifying regions of high confidence.Biotechnol J2016
26855303Exploring structural variants in environmentally sensitive gene families.Curr Opin Plant Biol2016
25611102Clinical validation of targeted next-generation sequencing for inherited disorders.Arch Pathol Lab Med2015
26438492Clonal Dissemination of Enterobacter cloacae Harboring blaKPC-3 in the Upper Midwestern United States.Antimicrob Agents Chemother2015
26643039ScanIndel: a hybrid framework for indel detection via gapped alignment, split reads and de novo assembly.Genome Med2015
26497383Cross platform analysis of methylation, miRNA and stem cell gene expression data in germ cell tumors highlights characteristic differences by tumor histology.BMC Cancer2015
25995385Transposon Mutagenesis Screen Identifies Potential Lung Cancer Drivers and CUL3 as a Tumor Suppressor.Mol Cancer Res2015
24476358SHEAR: sample heterogeneity estimation and assembly by reference.BMC Genomics2014
25155275Genomic characterization of the LEED..PEEDs, a gene family unique to the medicago lineage.G3 (Bethesda)2014
25181646Comparison of tissue sample processing methods for harvesting the viral metagenome and a snapshot of the RNA viral community in a turkey gut.J Virol Methods2014
24885806Implementation of Cloud based next generation sequencing data analysis in a clinical laboratory.BMC Res Notes2014
24723605Central cell-derived peptides regulate early embryo patterning in flowering plants.Science2014
24635121Patterns of divergence of a large family of nodule cysteine-rich peptides in accessions of Medicago truncatula.Plant J2014
24713431Fatty acid-binding protein E-FABP restricts tumor growth by promoting IFN-β responses in tumor-associated macrophages.Cancer Res2014
24423165Polymorphisms within the Telomerase Reverse Transcriptase gene (TERT) in four breeds of dogs selected for difference in lifespan and cancer susceptibility.BMC Vet Res2014
22899566Sex bias occurrence of hepatocellular carcinoma in Poly7 molecular subclass is associated with EGFR.Hepatology2013
24101480TALEN-engineered AR gene rearrangements reveal endocrine uncoupling of androgen receptor in prostate cancer.Proc Natl Acad Sci U S A2013
24256031Detecting small plant peptides using SPADA (Small Peptide Alignment Discovery Application).BMC Bioinformatics2013
23825368MMuFLR: missense mutation and frameshift location reporter.Bioinformatics2013
23822816Large-scale integrative network-based analysis identifies common pathways disrupted by copy number alterations across cancers.BMC Genomics2013
23573247Regulatory patterns of a large family of defensin-like genes expressed in nodules of Medicago truncatula.PLoS One2013
23527067Spatio-temporal expression patterns of Arabidopsis thaliana and Medicago truncatula defensin-like genes.PLoS One2013
23117885Androgen receptor splice variants mediate enzalutamide resistance in castration-resistant prostate cancer cell lines.Cancer Res2013
22427200An insertional mutagenesis screen identifies genes that cooperate with Mll-AF9 in a murine leukemogenesis model.Blood2012
23205180Case-parent analysis of variation in pubertal hormone genes and pediatric osteosarcoma: a Children's Oncology Group (COG) study.Int J Mol Epidemiol Genet2012
22699621The deubiquitinase USP9X suppresses pancreatic ductal adenocarcinoma.Nature2012
22697792Phosphorylated and sumoylation-deficient progesterone receptors drive proliferative gene signatures during breast cancer progression.Breast Cancer Res2012
22748055TAPDANCE: an automated tool to identify and annotate transposon insertion CISs and associations between CISs from next generation sequence data.BMC Bioinformatics2012
22556267A Sleeping Beauty mutagenesis screen reveals a tumor suppressor role for Ncoa2/Src-2 in liver cancer.Proc Natl Acad Sci U S A2012
22550957Identification and characterization of the defensin-like gene family of grapevine.Mol Plant Microbe Interact2012
22241771New methods for finding common insertion sites and co-occurring common insertion sites in transposon- and virus-based genetic screens.Nucleic Acids Res2012
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Collaborators

University of Minnesota
Co-authored papers 11
Co-authored papers 8
University of Minnesota Genomics Center (UMNGC)
Co-authored papers 5
Macalester College
Co-authored papers 5
Co-authored papers 3
Mayo Clinic
Co-authored papers 3
Co-authored papers 3
National Center for Genome Resources
Co-authored papers 2
USDA-Agricultural Research Service, Corn Insects and Crop Genetics Research Unit
Co-authored papers 2
Wellcome Sanger Institute
Co-authored papers 2
H. Lee Moffitt Cancer Center
Co-authored papers 2
University of Washington
Co-authored papers 2
International Center for Tropical Agriculture (CIAT)
Co-authored papers 1
University of Montpellier
Co-authored papers 1
Institut Francois Jacob, CNRS, Universite Paris-Saclay
Co-authored papers 1
The University of Melbourne
Co-authored papers 1
Co-authored papers 1
Co-authored papers 1
Massachusetts Institute of Technology
Co-authored papers 1
International Center for Tropical Agriculture (CIAT)
Co-authored papers 1
College of Agriculture and Life Sciences, Kangwon National University
Co-authored papers 1
International Institute of Tropical Agriculture (IITA)
Co-authored papers 1
Norwegian University of Science and Technology
Co-authored papers 1
Co-authored papers 1
The University of Texas MD Anderson Cancer Center
Co-authored papers 1
GE Global Research Center
Co-authored papers 1
Oregon State University
Co-authored papers 1
Wellcome Sanger Institute
Co-authored papers 1
Center for Coregulator Research, Baylor College of Medicine
Co-authored papers 1
Massachusetts General Hospital
Co-authored papers 1