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Author Details

Gyu Rie Lee
University of Washington
2014
16
10
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36544468Evaluating GPCR modeling and docking strategies in the era of deep learning-based protein structure prediction.Comput Struct Biotechnol J2022
36544468Evaluating GPCR modeling and docking strategies in the era of deep learning-based protein structure prediction.Comput Struct Biotechnol J2022
33320432De Novo Protein Design Using the Blueprint Builder in Rosetta.Curr Protoc Protein Sci2020
33320432De Novo Protein Design Using the Blueprint Builder in Rosetta.Curr Protoc Protein Sci2020
31001635GalaxyRefine2: simultaneous refinement of inaccurate local regions and overall protein structure.Nucleic Acids Res2019
31001635GalaxyRefine2: simultaneous refinement of inaccurate local regions and overall protein structure.Nucleic Acids Res2019
31325340High-accuracy refinement using Rosetta in CASP13.Proteins2019
31325340High-accuracy refinement using Rosetta in CASP13.Proteins2019
29044810Simultaneous refinement of inaccurate local regions and overall structure in the CASP12 protein model refinement experiment.Proteins2018
29044810Simultaneous refinement of inaccurate local regions and overall structure in the CASP12 protein model refinement experiment.Proteins2018
30104375Biophysical and functional characterization of Norrin signaling through Frizzled4.Proc Natl Acad Sci U S A2018
29967418An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12.Sci Rep2018
29786430GalaxyGPCRloop: Template-Based and Ab Initio Structure Sampling of the Extracellular Loops of G-Protein-Coupled Receptors.J Chem Inf Model2018
30104375Biophysical and functional characterization of Norrin signaling through Frizzled4.Proc Natl Acad Sci U S A2018
29967418An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12.Sci Rep2018
29786430GalaxyGPCRloop: Template-Based and Ab Initio Structure Sampling of the Extracellular Loops of G-Protein-Coupled Receptors.J Chem Inf Model2018
27770545Template-based modeling and ab initio refinement of protein oligomer structures using GALAXY in CAPRI round 30.Proteins2017
28842483Cell-cell adhesion in metazoans relies on evolutionarily conserved features of the α-catenin·β-catenin-binding interface.J Biol Chem2017
28370845Benchmarking predictions of allostery in liver pyruvate kinase in CAGI4.Hum Mutat2017
27770545Template-based modeling and ab initio refinement of protein oligomer structures using GALAXY in CAPRI round 30.Proteins2017
28370845Benchmarking predictions of allostery in liver pyruvate kinase in CAGI4.Hum Mutat2017
28842483Cell-cell adhesion in metazoans relies on evolutionarily conserved features of the α-catenin·β-catenin-binding interface.J Biol Chem2017
26172288Effective protein model structure refinement by loop modeling and overall relaxation.Proteins2016
27131365Galaxy7TM: flexible GPCR-ligand docking by structure refinement.Nucleic Acids Res2016
27122118Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.Proteins2016
26172288Effective protein model structure refinement by loop modeling and overall relaxation.Proteins2016
26583962Evaluation of GalaxyDock Based on the Community Structure-Activity Resource 2013 and 2014 Benchmark Studies.J Chem Inf Model2016
26583962Evaluation of GalaxyDock Based on the Community Structure-Activity Resource 2013 and 2014 Benchmark Studies.J Chem Inf Model2016
27122118Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.Proteins2016
27131365Galaxy7TM: flexible GPCR-ligand docking by structure refinement.Nucleic Acids Res2016
25419655Protein loop modeling using a new hybrid energy function and its application to modeling in inaccurate structural environments.PLoS One2014
25419655Protein loop modeling using a new hybrid energy function and its application to modeling in inaccurate structural environments.PLoS One2014
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Collaborators

Chaok Seok
Seoul National University
Co-authored papers 14
Lim Heo
Michigan State University
Co-authored papers 6
Hahnbeom Park
Co-authored papers 4
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Seoul National University
Co-authored papers 3
Jilong Li
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Co-authored papers 2
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Co-authored papers 2
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Johns Hopkins University School of Medicine
Co-authored papers 2
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Dmitri Beglov
Boston University
Co-authored papers 1
Liming Qiu
Perelman School of Medicine, University of Pennsylvania
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Artem B Mamonov
MGH/Harvard Medical School
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Brian Jim??nez-Garc??a
Utrecht University
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Rebecca C Wade
Center for Molecular Biology (ZMBH), Heidelberg University
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Jooyoung Lee
Korea Institute for Advanced Study
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