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Author Details

David C Samuels
Vanderbilt University
1990
177
45
PMIDPaper TitleJournal TitlePublished Year
37910437Pharmacogenetics of weight gain following switch from efavirenz- to integrase inhibitor-containing regimens.Pharmacogenet Genomics2024
36736868Polygenic Contributions to Chronic Overlapping Pain Conditions in a Large Electronic Health Record Sample.J Pain2023
37372402MitoTrace: A Computational Framework for Analyzing Mitochondrial Variation in Single-Cell RNA Sequencing Data.Genes (Basel)2023
37398208Detecting Problematic Opioid Use in the Electronic Health Record: Automation of the Addiction Behaviors Checklist in a Chronic Pain Population.medRxiv2023
37163006Detection of distant familial relatedness in biobanks for identification of undiagnosed carriers of a Mendelian disease variant: application to Long QT syndrome.medRxiv2023
36581210How T118M peripheral myelin protein 22 predisposes humans to Charcot-Marie-Tooth disease.J Biol Chem2023
34587493Plasma Arginine and Citrulline are Elevated in Diabetic Retinopathy.Am J Ophthalmol2022
36545043Accelerating Opioid Use Disorders Research by Integrating Multiple Data Modalities.Complex Psychiatry2022
36040257Compendium of proteins containing segments that exhibit zero-tolerance to amino acid variation in humans.Protein Sci2022
35232614Is it time to reassess variant annotation?Trends Genet2022
32722791Mitochondria and Human Immunodeficiency Virus: A Troubled Relationship Enters Its Fourth Decade.Clin Infect Dis2021
33704461Fate or coincidence: do COPD and major depression share genetic risk factors?Hum Mol Genet2021
34673309Two data-driven approaches to identifying the spectrum of problematic opioid use: A pilot study within a chronic pain cohort.Int J Med Inform2021
34562567EditPredict: Prediction of RNA editable sites with convolutional neural network.Genomics2021
34101088Mitochondrial DNA haplogroups and domain-specific neurocognitive performance in adults with HIV.J Neurovirol2021
34292886Targeting diacylglycerol lipase reduces alcohol consumption in preclinical models.J Clin Invest2021
34289364LYSMD3: A mammalian pattern recognition receptor for chitin.Cell Rep2021
34195939Higher CSF Ferritin Heavy-Chain (Fth1) and Transferrin Predict Better Neurocognitive Performance in People with HIV.Mol Neurobiol2021
33252493Mitochondrial DNA haplogroups and weight gain following switch to integrase strand transfer inhibitor-based antiretroviral therapy.AIDS2021
30475999Cancer-specific expression quantitative loci are affected by expression dysregulation.Brief Bioinform2020
31927570African Mitochondrial DNA Haplogroup L2 Is Associated With Slower Decline of β-cell Function and Lower Incidence of Diabetes Mellitus in Non-Hispanic, Black Women Living With Human Immunodeficiency Virus.Clin Infect Dis2020
31822125Mitochondrial DNA Haplogroups and Frailty in Adults Living with HIV.AIDS Res Hum Retroviruses2020
33055205Nucleic acid oxidation is associated with biomarkers of neurodegeneration in CSF in people with HIV.Neurol Neuroimmunol Neuroinflamm2020
33291726Global Autozygosity Is Associated with Cancer Risk, Mutational Signature and Prognosis.Cancers (Basel)2020
32773169Alternative Applications of Genotyping Array Data Using Multivariant Methods.Trends Genet2020
32161619Corrigendum: Genomic Positional Dissection of RNA Editomes in Tumor and Normal Samples.Front Genet2020
32511223Non-canonical RNA-DNA differences and other human genomic features are enriched within very short tandem repeats.PLoS Comput Biol2020
31588509MutEx: a multifaceted gateway for exploring integrative pan-cancer genomic data.Brief Bioinform2020
29631022Genomic and transcriptomic characterization of the mitochondrial-rich oncocytic phenotype on a thyroid carcinoma background.Mitochondrion2019
30026132Nuclear-Mitochondrial interactions influence susceptibility to HIV-associated neurocognitive impairment.Mitochondrion2019
30209774Cerebrospinal Fluid Ceruloplasmin, Haptoglobin, and Vascular Endothelial Growth Factor Are Associated with Neurocognitive Impairment in Adults with HIV Infection.Mol Neurobiol2019
29902512Quality and concordance of genotyping array data of 12,064 samples from 5840 cancer patients.Genomics2019
31306254Mitochondrial DNA Haplogroups and Delirium During Sepsis.Crit Care Med2019
30949194Genomic Positional Dissection of RNA Editomes in Tumor and Normal Samples.Front Genet2019
30832569Architectures and accuracy of artificial neural network for disease classification from omics data.BMC Genomics2019
30931940Identification of serum metabolites associating with chronic kidney disease progression and anti-fibrotic effect of 5-methoxytryptophan.Nat Commun2019
30596888Corrigendum to: Single-nucleotide variants in human RNA: RNA editing and beyond.Brief Funct Genomics2019
30312373Single-nucleotide variants in human RNA: RNA editing and beyond.Brief Funct Genomics2019
30531306Peripheral Blood Mitochondrial DNA Copy Number Obtained From Genome-Wide Genotype Data Is Associated With Neurocognitive Impairment in Persons With Chronic HIV Infection.J Acquir Immune Defic Syndr2019
30531304Relationships Between Adipose Mitochondrial Function, Serum Adiponectin, and Insulin Resistance in Persons With HIV After 96 Weeks of Antiretroviral Therapy.J Acquir Immune Defic Syndr2019
28605403Power and sample size calculations for high-throughput sequencing-based experiments.Brief Bioinform2018
29914646Relation of Body Mass Index to Symptom Burden in Patients withAtrial Fibrillation.Am J Cardiol2018
29968489Hemochromatosis (HFE) Gene Variants Are Associated with Increased Mitochondrial DNA Levels During HIV-1 Infection and Antiretroviral Therapy.AIDS Res Hum Retroviruses2018
29850888Mutation-specific effects in germline transmission of pathogenic mtDNA variants.Hum Reprod2018
30453947Bi-stream CNN Down Syndrome screening model based on genotyping array.BMC Med Genomics2018
28334151Strategies for processing and quality control of Illumina genotyping arrays.Brief Bioinform2018
29481608The Role of Mitochondrial DNA Variation in Age-Related Decline in Gait Speed Among Older Men Living With Human Immunodeficiency Virus.Clin Infect Dis2018
27687708Multi-perspective quality control of Illumina RNA sequencing data analysis.Brief Funct Genomics2017
28131802Improvements and impacts of GRCh38 human reference on high throughput sequencing data analysis.Genomics2017
28427421Cerebrospinal fluid (CSF) biomarkers of iron status are associated with CSF viral load, antiretroviral therapy, and demographic factors in HIV-infected adults.Fluids Barriers CNS2017
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Collaborators

Patrick F Chinnery
School of Clinical Medicine, University of Cambridge
Co-authored papers 38
Todd Hulgan
Vanderbilt University Medical Center
Co-authored papers 27
Hui Yu
Sylvester Comprehensive Cancer Center, University of Miami
Co-authored papers 14
Scott L Letendre
University of California, university of california san diego
Co-authored papers 12
Ronald J Ellis
University of California
Co-authored papers 12
Asha R Kallianpur
Cleveland Clinic/Lerner Research Institute
Co-authored papers 12
Donald Franklin
University of California San Diego
Co-authored papers 10
Douglass M Turnbull
Newcastle University
Co-authored papers 8
Robert W Taylor
Newcastle upon Tyne Hospitals NHS Foundation Trust
Co-authored papers 8
David W Haas
Vanderbilt University Medical Center
Co-authored papers 8
Rita Horvath
School of Clinical Medicine, University of Cambridge
Co-authored papers 7
Igor Grant
University of California San Diego
Co-authored papers 7
Robert K Heaton
University of California
Co-authored papers 7
William S Bush
Cleveland Institute for Computational Biology, Case Western Reserve University
Co-authored papers 7
Deborah G Murdock
Center for Mitochondrial and Epigenomic Medicine, Children's Hospital of Philadelphia
Co-authored papers 7
David B Clifford
Washington University School of Medicine
Co-authored papers 6
Justin C McArthur
Johns Hopkins School of Medicine
Co-authored papers 6
David M Simpson
Icahn School of Medicine at Mount Sinai
Co-authored papers 5
Christina M Marra
University of Washington
Co-authored papers 5
Susan Morgello
Icahn School of Medicine at Mount Sinai
Co-authored papers 5
Zhongming Zhao
Center for Precision Health, The University of Texas Health Science Center at Houston
Co-authored papers 5
John Allen McCutchan
University of California San Diego
Co-authored papers 5
Ann C Collier
University of Washington
Co-authored papers 5
Benjamin B Gelman
University of Texas Medical Branch
Co-authored papers 5
Peilin Jia
Center for Precision Health, The University of Texas Health Science Center at Houston
Co-authored papers 4
Milam A Brantley
University of Cambridge
Co-authored papers 4
Jill S Barnholtz-Sloan
National Cancer Institute
Co-authored papers 4
Hubert J M Smeets
Maastricht University Medical Centre+
Co-authored papers 3
Harsha K Rajasimha
Co-authored papers 3
Cinnamon Bloss
University of California
Co-authored papers 3
Release 1.2