Author details

Full Name

Aoife McLysaght

Affiliation

Smurfit Institute of Genetics, Trinity College Dublin

ORCID

Career Start Year

2000

Papers

H Index

Expertise

CM4AI Collaborator

Trey Ideker (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36765060	Reply to: Available data do not rule out Ctenophora as the sister group to all other Metazoa.	Nat Commun	2023
37579156	Horizontal transfer of vertebrate vision gene <i>IRBP</i> into the chordate ancestor.	Proc Natl Acad Sci U S A	2023
37776514	Ohnologs and SSD Paralogs Differ in Genomic and Expression Features Related to Dosage Constraints.	Genome Biol Evol	2023
37208359	Independent rediploidization masks shared whole genome duplication in the sturgeon-paddlefish ancestor.	Nat Commun	2023
35018456	Evidence from Drosophila Supports Higher Duplicability of Faster Evolving Genes.	Genome Biol Evol	2022
35852990	The deceptive simplicity of mendelian genetics.	PLoS Biol	2022
36543139	De novo birth of functional microproteins in the human lineage.	Cell Rep	2022
36333285	Author Correction: Evidence for sponges as sister to all other animals from partitioned phylogenomics with mixture models and recoding.	Nat Commun	2022
35932283	Micro(RNA)-cloud can perpetuate physiological adaptation of skeletal muscle to exercise and energy imbalance.	J Physiol	2022
33398071	Author Correction: De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences.	Nat Commun	2021
33741994	Evidence for sponges as sister to all other animals from partitioned phylogenomics with mixture models and recoding.	Nat Commun	2021
34326346	Publisher Correction: Reconstruction of proto-vertebrate, protocyclostome and proto-gnathostome genomes provides new insights into early vertebrate evolution.	Nat Commun	2021
34301952	Reconstruction of proto-vertebrate, proto-cyclostome and proto-gnathostome genomes provides new insights into early vertebrate evolution.	Nat Commun	2021
32034123	De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences.	Nat Commun	2020
32066524	Synteny-based analyses indicate that sequence divergence is not the main source of orphan genes.	Elife	2020
30298392	Computational Prediction of De Novo Emerged Protein-Coding Genes.	Methods Mol Biol	2019
30963617	Evolutionary journey and characterisation of a novel pan-gene associated with beer strains of Saccharomyces cerevisiae.	Yeast	2019
30674659	Macrosynteny analysis shows the absence of ancient whole-genome duplication in lepidopteran insects.	Proc Natl Acad Sci U S A	2019
29126243	Faster Evolving Primate Genes Are More Likely to Duplicate.	Mol Biol Evol	2018
30252115	Pseudogenes Provide Evolutionary Evidence for the Competitive Endogenous RNA Hypothesis.	Mol Biol Evol	2018
29628311	A Family of Vertebrate-Specific Polycombs Encoded by the LCOR/LCORL Genes Balance PRC2 Subtype Activities.	Mol Cell	2018
28863777	Dosage-sensitive genes in evolution and disease.	BMC Biol	2017
28176757	Dosage sensitivity is a major determinant of human copy number variant pathogenicity.	Nat Commun	2017
28881993	Genomes as documents of evolutionary history: a probabilistic macrosynteny model for the reconstruction of ancestral genomes.	Bioinformatics	2017
27056411	De Novo Genes Arise at a Slow but Steady Rate along the Primate Lineage and Have Been Subject to Incomplete Lineage Sorting.	Genome Biol Evol	2016
27452112	Open questions in the study of de novo genes: what, how and why.	Nat Rev Genet	2016
27297469	Spatial Colocalization of Human Ohnolog Pairs Acts to Maintain Dosage-Balance.	Mol Biol Evol	2016
26494712	A chromatin-independent role of Polycomb-like 1 to stabilize p53 and promote cellular quiescence.	Genes Dev	2015
26323763	New genes from non-coding sequence: the role of de novo protein-coding genes in eukaryotic evolutionary innovation.	Philos Trans R Soc Lond B Biol Sci	2015
24368850	Ohnologs are overrepresented in pathogenic copy number mutations.	Proc Natl Acad Sci U S A	2014
23268114	A survey of host range genes in poxvirus genomes.	Infect Genet Evol	2013
23917329	Genome-wide deserts for copy number variation in vertebrates.	Nat Commun	2013
23572418	Treasurer's report for financial year (FY) 2011.	Genome Biol Evol	2013
23584977	Treasurer's report for financial year (FY) 2011.	Mol Biol Evol	2013
22392987	Mammalian X chromosome inactivation evolved as a dosage-compensation mechanism for dosage-sensitive genes on the X chromosome.	Proc Natl Acad Sci U S A	2012
23185269	De novo origin of protein-coding genes in murine rodents.	PLoS One	2012
22835904	Positionally biased gene loss after whole genome duplication: evidence from human, yeast, and plant.	Genome Res	2012
22490996	Evolution of vertebrate tissues driven by differential modes of gene duplication.	DNA Res	2012
21881679	Patterns of indirect protein interactions suggest a spatial organization to metabolism.	Mol Biosyst	2011
22102832	De novo origins of human genes.	PLoS Genet	2011
20439718	Ohnologs in the human genome are dosage balanced and frequently associated with disease.	Proc Natl Acad Sci U S A	2010
20509897	Duplicability of self-interacting human genes.	BMC Evol Biol	2010
19285746	The complex relationship of gene duplication and essentiality.	Trends Genet	2009
19726446	Recent de novo origin of human protein-coding genes.	Genome Res	2009
18304319	Identification of multiple independent horizontal gene transfers into poxviruses using a comparative genomics approach.	BMC Evol Biol	2008
18774619	Evolutionary steps of sex chromosomes are reflected in retrogenes.	Trends Genet	2008
18573844	Interacting gene clusters and the evolution of the vertebrate immune system.	Mol Biol Evol	2008
16720694	High rate of recent intron gain and loss in simultaneously duplicated Arabidopsis genes.	Mol Biol Evol	2006
15585524	Porter: a new, accurate server for protein secondary structure prediction.	Bioinformatics	2005
15262815	Genomic features in the breakpoint regions between syntenic blocks.	Bioinformatics	2004

1 - 50 of 56

Julien Roux

Karolinska Institutet

Career Start Year 2008

Number of shared co-authors 0

Francesc L??pez-Gir??ldez

Yale Center for Genomic Analysis

Career Start Year 2005

Number of shared co-authors 2

Andrew Cree

Baylor College of Medicine

Career Start Year 2005

Number of shared co-authors 44

Ziad Khan

Baylor College of Medicine

Career Start Year 2005

Number of shared co-authors 38

Ze Cheng

University of Washington School of Medicine

Career Start Year 2004

Number of shared co-authors 27

Jeffrey A Rosenfeld

Cancer Institute of New Jersey

Career Start Year 2004

Number of shared co-authors 3

Jennifer Hume

Baylor College of Medicine

Career Start Year 2004

Number of shared co-authors 39

Manolis Kellis

Massachusetts Institute of Technology

Career Start Year 2003

Number of shared co-authors 33

Arcadi Navarro

Barcelonabeta Brain Research Center (BBRC), Pasqual Maragall Foundation

Career Start Year 2003

Number of shared co-authors 18

Christie L Kovar

Baylor College of Medicine

Career Start Year 2002

Number of shared co-authors 45

Robert Baertsch

Center for Biomolecular Science and Engineering, University of California

Career Start Year 2002

Number of shared co-authors 53

Olivier Fedrigo

The Rockefeller University

Career Start Year 2001

Number of shared co-authors 15

Robert Friedman

University of South Carolina

Career Start Year 2000

Number of shared co-authors 1

Martin S Taylor

Institute of Genetics and Cancer, University of Edinburgh

Career Start Year 2000

Number of shared co-authors 30

Tina Graves

McDonnell Genome Institute, Washington University

Career Start Year 1998

Number of shared co-authors 55

Anton Nekrutenko

The Pennsylvania State University, University Park

Career Start Year 1998

Number of shared co-authors 25

Berend Snel

Utrecht University

Career Start Year 1998

Number of shared co-authors 2

Colin A Semple

Institute of Genetics and Cancer, University of Edinburgh

Career Start Year 1997

Number of shared co-authors 12

Marc Robinson-Rechavi

University of Lausanne

Career Start Year 1997

Number of shared co-authors 7

David A Liberles

Temple University

Career Start Year 1996

Number of shared co-authors 1

Guojie Zhang

University of Copenhagen, Universitetsparken 15

Career Start Year 1995

Number of shared co-authors 18

Ping Liang

College of Chemistry and Chemical Engineering, Hunan University

Career Start Year 1995

Number of shared co-authors 1

Martin J Lercher

Institute for Computer Science, Heinrich Heine University

Career Start Year 1994

Number of shared co-authors 4

Erich Bornberg-Bauer

Institute for Evolution and Biodiversity, University of Munster

Career Start Year 1993

Number of shared co-authors 9

Wesley C Warren

Institute of Informatics and Data Sciences, University of Missouri

Career Start Year 1990

Number of shared co-authors 37

Roderic Guig??

Barcelona Institute of Science and Technology

Career Start Year 1990

Number of shared co-authors 58

David L Adelson

University of Adelaide

Career Start Year 1985

Number of shared co-authors 13

Diethard Tautz

Max Planck Institute for Evolutionary Biology

Career Start Year 1983

Number of shared co-authors 11

John M Hancock

the University of Texas Health Science Center at Houston

Career Start Year 1982

Number of shared co-authors 7

Dan Graur

University of Houston

Career Start Year 1982

Number of shared co-authors 14

row(s) 1 - 30 of 30

Nikolaos Vakirlis

Institute for General Microbiology, Christian Albrechts University

Co-authored papers 6

Karsten Hokamp

Smurfit Institute of Genetics, Trinity College of Dublin

Co-authored papers 5

Anne-Ruxandra Carvunis

University of Pittsburgh School of Medicine.

Co-authored papers 3

Allyson F O'Donnell

University of Pittsburgh

Co-authored papers 2

Stephen Branden Van Oss

University of Pittsburgh

Co-authored papers 2

Trey Ideker (CM4AI)

University of California San Diego

Co-authored papers 2

Brian Hsu

University of California San Diego

Co-authored papers 2

Kate Medetgul-Ernar

University of California San Diego Health Moores Cancer Center.

Co-authored papers 2

Aaron Wacholder

University of Pittsburgh

Co-authored papers 2

Omer Acar

University of Illinois at Chicago

Co-authored papers 2

Eric Conway

Conway Institute, University College Dublin

Co-authored papers 2

Nelson C Coelho

University of Pittsburgh, USA Pittsburgh Center for Evolutionary Biology and Medicine

Co-authored papers 2

Adrian P Bracken

Smurfit Institute of Genetics, Trinity College Dublin

Co-authored papers 2

Chris Clee

Co-authored papers 1

Elia Stupka

Center for Omics Sciences, IRCCS San Raffaele Scientific Institute

Co-authored papers 1

Arian F A Smit

Co-authored papers 1

Jean Thierry-Mieg

Co-authored papers 1

Michael L Metzker

Co-authored papers 1

Jill P Mesirov

University of California San Diego

Co-authored papers 1

Robert W Plumb

Co-authored papers 1

Michele Clamp

Harvard University

Co-authored papers 1

John Bouck

Baylor College of Medicine

Co-authored papers 1

Raju Kucherlapati

Harvard Medical School

Co-authored papers 1

David Kulp

Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard

Co-authored papers 1

Mark S Guyer

National Human Genome Research Institute

Co-authored papers 1

Mark T Ross

Illumina Cambridge Ltd.

Co-authored papers 1

Simon Kasif

Boston University

Co-authored papers 1

Jean Weissenbach

Institut Francois Jacob, CNRS, Universite Paris-Saclay

Co-authored papers 1

Carlos J Camacho

University of Pittsburgh

Co-authored papers 1

Chris P Ponting

The University of Edinburgh

Co-authored papers 1

1 - 30

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