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Author Details

Amos Tanay
Weizmann Institute of Science
2001
106
55
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
38062254Longitudinal machine learning uncouples healthy aging factors from chronic disease risks.Nat Aging2024
36972357Early Infiltration of Innate Immune Cells to the Liver Depletes HNF4α and Promotes Extrahepatic Carcinogenesis.Cancer Discov2023
37798781MCProj: metacell projection for interpretable and quantitative use of transcriptional atlases.Genome Biol2023
37386027Single cell Hi-C identifies plastic chromosome conformations underlying the gastrulation enhancer landscape.Nat Commun2023
37209682Time-aligned hourglass gastrulation models in rabbit and mouse.Cell2023
35241835The interaction of CD4<sup>+</sup> helper T cells with dendritic cells shapes the tumor microenvironment and immune checkpoint blockade response.Nat Cancer2022
35440087Metacell-2: a divide-and-conquer metacell algorithm for scalable scRNA-seq analysis.Genome Biol2022
36516250TATTOO-seq delineates spatial and cell type-specific regulatory programs in the developing limb.Sci Adv2022
36510023DNA methyltransferases 3A and 3B target specific sequences during mouse gastrulation.Nat Struct Mol Biol2022
35908548The intrinsic and extrinsic effects of TET proteins during gastrulation.Cell2022
33945788A stony coral cell atlas illuminates the molecular and cellular basis of coral symbiosis, calcification, and immunity.Cell2021
33911081Recurrent deletions in clonal hematopoiesis are driven by microhomology-mediated end joining.Nat Commun2021
33767450Single-cell transcriptomic analyses provide insights into the developmental origins of neuroblastoma.Nat Genet2021
33731935Publisher Correction: LifeTime and improving European healthcare through cell-based interceptive medicine.Nature2021
33531344Hormone seasonality in medical records suggests circannual endocrine circuits.Proc Natl Acad Sci U S A2021
33932341A single-embryo, single-cell time-resolved model for mouse gastrulation.Cell2021
35121883IRS1 phosphorylation underlies the non-stochastic probability of cancer cells to persist during EGFR inhibition therapy.Nat Cancer2021
34518533DNA methylation landscapes of 1538 breast cancers reveal a replication-linked clock, epigenomic instability and cis-regulation.Nat Commun2021
34426707Personalized lab test models to quantify disease potentials in healthy individuals.Nat Med2021
34504322Single-cell analysis of regions of interest (SCARI) using a photosensitive tag.Nat Chem Biol2021
34020820Evolutionary cell type mapping with single-cell genomics.Trends Genet2021
34135484Dissection of floral transition by single-meristem transcriptomes at high temporal resolution.Nat Plants2021
32490206A single-cell view on alga-virus interactions reveals sequential transcriptional programs and infection states.Sci Adv2020
32601473Single-cell analysis of clonal maintenance of transcriptional and epigenetic states in cancer cells.Nat Genet2020
32894860LifeTime and improving European healthcare through cell-based interceptive medicine.Nature2020
32152598Dissecting cellular crosstalk by sequencing physically interacting cells.Nat Biotechnol2020
32359441Dysfunctional CD8 T Cells Form a Proliferative, Dynamically Regulated Compartment within Human Melanoma.Cell2020
30595452Dysfunctional CD8 T Cells Form a Proliferative, Dynamically Regulated Compartment within Human Melanoma.Cell2019
31562479Voices in methods development.Nat Methods2019
31604482MetaCell: analysis of single-cell RNA-seq data using K-nn graph partitions.Genome Biol2019
31101904MARS-seq2.0: an experimental and analytical pipeline for indexed sorting combined with single-cell RNA sequencing.Nat Protoc2019
31100387The EXPANDER Integrated Platform for Transcriptome Analysis.J Mol Biol2019
30554962Deterministic Somatic Cell Reprogramming Involves Continuous Transcriptional Changes Governed by Myc and Epigenetic-Driven Modules.Cell Stem Cell2019
30350867Global DNA methylation reflects spatial heterogeneity and molecular evolution of lung adenocarcinomas.Int J Cancer2019
30275045Corrigendum: p53 is essential for DNA methylation homeostasis in naïve embryonic stem cells, and its loss promotes clonal heterogeneity.Genes Dev2018
29915358Single-cell characterization of haematopoietic progenitors and their trajectories in homeostasis and perturbed haematopoiesis.Nat Cell Biol2018
29942020Early metazoan cell type diversity and the evolution of multicellular gene regulation.Nat Ecol Evol2018
29856957Cnidarian Cell Type Diversity and Regulation Revealed by Whole-Organism Single-Cell RNA-Seq.Cell2018
29988082Prediction of acute myeloid leukaemia risk in healthy individuals.Nature2018
30523328Single cell dissection of plasma cell heterogeneity in symptomatic and asymptomatic myeloma.Nat Med2018
28682332Cell-cycle dynamics of chromosomal organization at single-cell resolution.Nature2017
28461505Suppressors and activators of JAK-STAT signaling at diagnosis and relapse of acute lymphoblastic leukemia in Down syndrome.Proc Natl Acad Sci U S A2017
28102262Scaling single-cell genomics from phenomenology to mechanism.Nature2017
29053968Multiscale 3D Genome Rewiring during Mouse Neural Development.Cell2017
28607180p53 is essential for DNA methylation homeostasis in naïve embryonic stem cells, and its loss promotes clonal heterogeneity.Genes Dev2017
27085808The mutation spectrum in genomic late replication domains shapes mammalian GC content.Nucleic Acids Res2016
28915372Transcriptional Heterogeneity and Lineage Commitment in Myeloid Progenitors.Cell2016
27984734Dissecting Immune Circuits by Linking CRISPR-Pooled Screens with Single-Cell RNA-Seq.Cell2016
27846223Combgap Promotes Ovarian Niche Development and Chromatin Association of EcR-Binding Regions in BR-C.PLoS Genet2016
27919068Capturing pairwise and multi-way chromosomal conformations using chromosomal walks.Nature2016
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Collaborators

Ido Amit
Weizmann Institute of Science
Co-authored papers 22
Ron Shamir
Tel Aviv University
Co-authored papers 16
Roded Sharan
Tel Aviv University
Co-authored papers 5
Jacob H Hanna
Co-authored papers 5
Wolf Reik
The Babraham Institute
Co-authored papers 4
Deborah R Winter
Northwestern University Feinberg School of Medicine
Co-authored papers 3
Aviv Regev
Broad Institute of MIT and Harvard
Co-authored papers 3
Christoph Bock
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences
Co-authored papers 3
Florent Ginhoux
Co-authored papers 3
Alfonso Valencia
Josep Carreras Leukaemia Research Institute (IJC)
Co-authored papers 3
Igor Ulitsky
Weizmann Institute of Science
Co-authored papers 3
Eran Segal
Weizmann Institute of Science
Co-authored papers 2
Susan M Gasser
L'Institut Suisse de Recherche Experimentale sur le Cancer (ISREC) Foundation
Co-authored papers 2
Philip Rosenstiel
Co-authored papers 2
Thierry Voet
KU Leuven Institute for Single Cell Omics (LISCO)
Co-authored papers 2
John C Marioni
Cancer Research UK Cambridge Institute, University of Cambridge
Co-authored papers 2
Shalev Itzkovitz
Co-authored papers 2
Helen Parkinson
European Bioinformatics Institute
Co-authored papers 2
Matthew L Freedman
Dana-Farber Cancer Institute
Co-authored papers 2
Brian E Henderson
University of Southern California
Co-authored papers 2
Ana Pombo
Polytechnic Institute of Leiria
Co-authored papers 2
Maria-Elena Torres-Padilla
Institute of Epigenetics and Stem Cells (IES)
Co-authored papers 2
Christopher A Haiman
University of Southern California
Co-authored papers 2
Andreas Schlitzer
Co-authored papers 2
Jan Ellenberg
Institute of Child Health and Human Development
Co-authored papers 2
Oliver Stegle
Wellcome Sanger Institute
Co-authored papers 2
Gerhard A Coetzee
Van Andel Institute
Co-authored papers 2
Hans Clevers
Princess Maxima Center for Pediatric Oncology
Co-authored papers 2
Norbert H??bner
Max Delbruck Center for Molecular Medicine in the Helmholtz Association (MDC)
Co-authored papers 2
Ran D Balicer
Clalit Health Services, Ben Gurion University
Co-authored papers 2
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