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Author Details

Irina A Rodionova
University of California at San Diego
2008
40
20
Gloria M Sheynkman (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37147430E. coli allantoinase is activated by the downstream metabolic enzyme, glycerate kinase, and stabilizes the putative allantoin transporter by direct binding.Sci Rep2023
37292663CyuR is a Dual Regulator for L-Cysteine Dependent Antimicrobial Resistance in <i>Escherichia coli</i>.bioRxiv2023
36008760Evolution of transcriptional regulation of histidine metabolism in Gram-positive bacteria.BMC Genomics2022
35508583A systems approach discovers the role and characteristics of seven LysR type transcription factors in Escherichia coli.Sci Rep2022
35961013A roadmap for the functional annotation of protein families: a community perspective.Database (Oxford)2022
34060910Transcriptional Regulation of Plant Biomass Degradation and Carbohydrate Utilization Genes in the Extreme Thermophile <i>Caldicellulosiruptor bescii</i>.mSystems2021
34428301Unraveling the functions of uncharacterized transcription factors in Escherichia coli using ChIP-exo.Nucleic Acids Res2021
34413462Identification of a transcription factor, PunR, that regulates the purine and purine nucleoside transporter punC in E. coli.Commun Biol2021
30969758Novel Antimycobacterial Compounds Suppress NAD Biogenesis by Targeting a Unique Pocket of NaMN Adenylyltransferase.ACS Chem Biol2019
31509826A Riboflavin Transporter in Bdellovibrio exovorous JSS.J Mol Microbiol Biotechnol2019
29176613Global landscape of cell envelope protein complexes in Escherichia coli.Nat Biotechnol2018
30249705Novel Metabolic Pathways and Regulons for Hexuronate Utilization in Proteobacteria.J Bacteriol2018
30089654The uridylyltransferase GlnD and tRNA modification GTPase MnmE allosterically control <i>Escherichia coli</i> folylpoly-γ-glutamate synthase FolC.J Biol Chem2018
29229699The Nitrogen Regulatory PII Protein (GlnB) and <i>N</i>-Acetylglucosamine 6-Phosphate Epimerase (NanE) Allosterically Activate Glucosamine 6-Phosphate Deaminase (NagB) in Escherichia coli.J Bacteriol2018
28073944A novel bifunctional transcriptional regulator of riboflavin metabolism in Archaea.Nucleic Acids Res2017
28137868Elucidation of roles for vitamin B<sub>12</sub> in regulation of folate, ubiquinone, and methionine metabolism.Proc Natl Acad Sci U S A2017
28634232The phosphocarrier protein HPr of the bacterial phosphotransferase system globally regulates energy metabolism by directly interacting with multiple enzymes in <i>Escherichia coli</i>.J Biol Chem2017
27920295A Novel Transcriptional Regulator Related to Thiamine Phosphate Synthase Controls Thiamine Metabolism Genes in Archaea.J Bacteriol2017
25345570Genomic distribution of B-vitamin auxotrophy and uptake transporters in environmental bacteria from the Chloroflexi phylum.Environ Microbiol Rep2015
26175007Arginylation regulates purine nucleotide biosynthesis by enhancing the activity of phosphoribosyl pyrophosphate synthase.Nat Commun2015
25939834Novel Transcriptional Regulons for Autotrophic Cycle Genes in Crenarchaeota.J Bacteriol2015
25631047Mycobacterial nicotinate mononucleotide adenylyltransferase: structure, mechanism, and implications for drug discovery.J Biol Chem2015
24549842Metabolic and bactericidal effects of targeted suppression of NadD and NadE enzymes in mycobacteria.mBio2014
23204464Quinolinate salvage and insights for targeting NAD biosynthesis in group A streptococci.J Bacteriol2013
24391637Comparative genomics and functional analysis of rhamnose catabolic pathways and regulons in bacteria.Front Microbiol2013
23986752Transcriptional regulation of the carbohydrate utilization network in Thermotoga maritima.Front Microbiol2013
24013487The COMBREX project: design, methodology, and initial results.PLoS Biol2013
23441918Novel inositol catabolic pathway in Thermotoga maritima.Environ Microbiol2013
22925190Tagaturonate-fructuronate epimerase UxaE, a novel enzyme in the hexuronate catabolic network in Thermotoga maritima.Environ Microbiol2012
22885293Diversity and versatility of the Thermotoga maritima sugar kinome.J Bacteriol2012
21564556Targeting metalloproteins by fragment-based lead discovery.Chem Biol Drug Des2011
22215998The FGGY carbohydrate kinase family: insights into the evolution of functional specificities.PLoS Comput Biol2011
21810205Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus.BMC Genomics2011
20578699Complexes of bacterial nicotinate mononucleotide adenylyltransferase with inhibitors: implication for structure-based drug design and improvement.J Med Chem2010
20836887Genomic encyclopedia of sugar utilization pathways in the Shewanella genus.BMC Genomics2010
18931129A novel class of modular transporters for vitamins in prokaryotes.J Bacteriol2009
19636011Phase II, randomized, double-blind, placebo-controlled study of recombinant human intestinal trefoil factor oral spray for prevention of oral mucositis in patients with colorectal cancer who are receiving fluorouracil-based chemotherapy.J Clin Oncol2009
19716475Targeting NAD biosynthesis in bacterial pathogens: Structure-based development of inhibitors of nicotinate mononucleotide adenylyltransferase NadD.Chem Biol2009
18156253Glycerate 2-kinase of Thermotoga maritima and genomic reconstruction of related metabolic pathways.J Bacteriol2008
18276644Transcriptional regulation of NAD metabolism in bacteria: genomic reconstruction of NiaR (YrxA) regulon.Nucleic Acids Res2008
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Collaborators

Sanford Burnham Prebys Medical Discovery Institute
Co-authored papers 23
Sanford Burnham Prebys Medical Discovery Institute
Co-authored papers 22
University of California at San Diego
Co-authored papers 8
Center for the Study of Biological Complexity, Virginia Commonwealth University
Co-authored papers 6
University of California San Diego
Co-authored papers 6
University of California at San Diego
Co-authored papers 5
University of Regina
Co-authored papers 5
Center for the Study of Biological Complexity, Virginia Commonwealth University
Co-authored papers 4
University of Florida
Co-authored papers 3
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Co-authored papers 3
Boston University School of Medicine, Boston University
Co-authored papers 3
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 2
University of Regina
Co-authored papers 2
University of Regina
Co-authored papers 2
Albert Einstein College of Medicine
Co-authored papers 2
University of Illinois at Urbana-Champaign
Co-authored papers 2
Hope College
Co-authored papers 2
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 2
University of Oklahoma
Co-authored papers 2
Sanford Burnham Prebys Medical Discovery Institute
Co-authored papers 2
DOE Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 2
Pangea Systems Inc., USA and Marine Biological Laboratory
Co-authored papers 2
Iowa State University
Co-authored papers 2
Cancer Center, Sanford Burnham Prebys Medical Discovery Institute
Co-authored papers 2
Albert Einstein College of Medicine
Co-authored papers 2
University of Ottawa
Co-authored papers 1
Vanderbilt University Medical Center
Co-authored papers 1
Co-authored papers 1
Genetics Institute, University of Florida
Co-authored papers 1
University of Florida
Co-authored papers 1