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Author Details

Karla B Heidelberg
The University of Southern California
2002
37
21
PMIDPaper TitleJournal TitlePublished Year
36174701Temporal profiling resolves the drivers of microbial nitrogen cycling variability in coastal sediments.Sci Total Environ2023
36992633Using metatranscriptomics to better understand the role of microbial nitrogen cycling in coastal sediment benthic flux denitrification efficiency.Environ Microbiol Rep2023
30620427SSU-rRNA Gene Sequencing Survey of Benthic Microbial Eukaryotes from Guaymas Basin Hydrothermal Vent.J Eukaryot Microbiol2019
29708635Shifting metabolic priorities among key protistan taxa within and below the euphotic zone.Environ Microbiol2018
29891388Primer selection influences abundance estimates of ammonia oxidizing archaea in coastal marine sediments.Mar Environ Res2018
29438384A tale of two mixotrophic chrysophytes: Insights into the metabolisms of two Ochromonas species (Chrysophyceae) through a comparison of gene expression.PLoS One2018
27867198Probing the evolution, ecology and physiology of marine protists using transcriptomics.Nat Rev Microbiol2017
28196482Effect of light and prey availability on gene expression of the mixotrophic chrysophyte, Ochromonas sp.BMC Genomics2017
28524870Autotrophic and heterotrophic acquisition of carbon and nitrogen by a mixotrophic chrysophyte established through stable isotope analysis.ISME J2017
28060364Single-cell transcriptomics of small microbial eukaryotes: limitations and potential.ISME J2017
27194617Gene expression characterizes different nutritional strategies among three mixotrophic protists.FEMS Microbiol Ecol2016
27445997Microbiomes of Muricea californica and M. fruticosa: Comparative Analyses of Two Co-occurring Eastern Pacific Octocorals.Front Microbiol2016
25709557De novo sequences of Haloquadratum walsbyi from Lake Tyrrell, Australia, reveal a variable genomic landscape.Archaea2015
26157435Changes in gene expression of Prymnesium parvum induced by nitrogen and phosphorus limitation.Front Microbiol2015
25918833Metagenomic and lipid analyses reveal a diel cycle in a hypersaline microbial ecosystem.ISME J2015
25941521Gene expression in the mixotrophic prymnesiophyte, Prymnesium parvum, responds to prey availability.Front Microbiol2015
24335829Seasonal fluctuations in ionic concentrations drive microbial succession in a hypersaline lake community.ISME J2014
25258679Comparative genomics of planktonic Flavobacteriaceae from the Gulf of Maine using metagenomic data.Microbiome2014
24926657Comparative transcriptome analysis of four prymnesiophyte algae.PLoS One2014
23717306Characterization of eukaryotic microbial diversity in hypersaline Lake Tyrrell, Australia.Front Microbiol2013
23853523Virus-host and CRISPR dynamics in Archaea-dominated hypersaline Lake Tyrrell, Victoria, Australia.Archaea2013
23995931New approaches indicate constant viral diversity despite shifts in assemblage structure in an Australian hypersaline lake.Appl Environ Microbiol2013
23638384Microbial secondary succession in soil microcosms of a desert oasis in the Cuatro Cienegas Basin, Mexico.PeerJ2013
23637883Assembly-driven community genomics of a hypersaline microbial ecosystem.PLoS One2013
21716304De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities.ISME J2012
22773627Dynamic viral populations in hypersaline systems as revealed by metagenomic assembly.Appl Environ Microbiol2012
22447590Comparative analysis of eukaryotic marine microbial assemblages from 18S rRNA gene and gene transcript clone libraries by using different methods of extraction.Appl Environ Microbiol2012
20046854Vertical distribution and diel patterns of zooplankton abundance and biomass at Conch Reef, Florida Keys (USA).J Plankton Res2010
20953417Marine genomics: at the interface of marine microbial ecology and biodiscovery.Microb Biotechnol2010
20520651Functional genomic signatures of sponge bacteria reveal unique and shared features of symbiosis.ISME J2010
19005497Protists are microbes too: a perspective.ISME J2009
18213365The Sorcerer II Global Ocean Sampling Expedition: metagenomic characterization of viruses within aquatic microbial samples.PLoS One2008
17355171The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families.PLoS Biol2007
17355176The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific.PLoS Biol2007
16039858Taking metagenomic studies in context.Trends Microbiol2005
12406742Seasonality of Chesapeake Bay bacterioplankton species.Appl Environ Microbiol2002
12406743Bacteria of the gamma-subclass Proteobacteria associated with zooplankton in Chesapeake Bay.Appl Environ Microbiol2002
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The J. Craig Venter Institute.
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Mayo Clinic
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University of California Riverside School of Medicine
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University of Cincinnati College of Medicine
Co-authored papers 1
Scripps Institution of Oceanography, University of California San Diego
Co-authored papers 1
University of California san francisco
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J. Craig Venter Institute
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ShanghaiTech University
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Lawrence Berkeley National Laboratory
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