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Author Details

Manon Ragonnet-Cronin
Imperial College London
2010
43
18
PMIDPaper TitleJournal TitlePublished Year
36851617Prediction of Coreceptor Tropism in HIV-1 Subtype C in Botswana.Viruses2023
37995354COVID-19 therapeutics: stewardship in England and considerations for antimicrobial resistance.J Antimicrob Chemother2023
37286554Generation of SARS-CoV-2 escape mutations by monoclonal antibody therapy.Nat Commun2023
37150186Lessons from COVID-19 for rescalable data collection.Lancet Infect Dis2023
34077517Human Immunodeficiency Virus (HIV) Genetic Diversity Informs Stage of HIV-1 Infection Among Patients Receiving Antiretroviral Therapy in Botswana.J Infect Dis2022
37333843Evaluating whole HIV-1 genome sequence for estimation of incidence and migration in a rural South African community.Wellcome Open Res2022
36031617Epidemiological and viral characteristics of undiagnosed HIV infections in Botswana.BMC Infect Dis2022
34878434Forecasting HIV-1 Genetic Cluster Growth in Illinois,United States.J Acquir Immune Defic Syndr2022
35084383Diagnosis delays in the UK according to pre or postmigration acquisition of HIV.AIDS2022
33349132Sorting by Race/Ethnicity Across HIV Genetic Transmission Networks in Three Major Metropolitan Areas in the United States.AIDS Res Hum Retroviruses2021
33597546Reduction in mobility and COVID-19 transmission.Nat Commun2021
33846321Genetic evidence for the association between COVID-19 epidemic severity and timing of non-pharmaceutical interventions.Nat Commun2021
33747543Genomic epidemiology of a densely sampled COVID-19 outbreak in China.Virus Evol2021
34159215Interplay Between Geography and HIV Transmission Clusters in Los Angeles County.Open Forum Infect Dis2021
33130212Database of epidemic trends and control measures during the first wave of COVID-19 in mainland China.Int J Infect Dis2021
32830853SARS-CoV-2 infection prevalence on repatriation flights from Wuhan City, China.J Travel Med2020
33093069Sequencing identifies multiple early introductions of SARS-CoV-2 to the New York City region.Genome Res2020
30395173FAVITES: simultaneous simulation of transmission networks, phylogenetic trees and sequences.Bioinformatics2019
31616569Hepatitis C virus genotype 1 and 2 recombinant genomes and the phylogeographic history of the 2k/1b lineage.Virus Evol2019
31272659Consent and criminalisation concerns over phylogenetic analysis of surveillance data - Authors' reply.Lancet HIV2019
31194901HIV co-infection is associated with increased transmission risk in patients with chronic hepatitis C virus.J Viral Hepat2019
30946142Understanding disclosed and cryptic HIV transmission risk via genetic analysis: what are we missing and when does it matter?Curr Opin HIV AIDS2019
30765313HIV transmission networks among transgender women in Los Angeles County, CA, USA: a phylogenetic analysis of surveillance data.Lancet HIV2019
29112331Intrapatient viral diversity and treatment outcome in patients with genotype 3a hepatitis C virus infection on sofosbuvir-containing regimens.J Viral Hepat2018
29893244Non-disclosed men who have sex with men in UK HIV transmission networks: phylogenetic analysis of surveillance data.Lancet HIV2018
29546333Recent and Rapid Transmission of HIV Among People Who Inject Drugs in Scotland Revealed Through Phylogenetic Analysis.J Infect Dis2018
27824249Identifying Transmission Clusters with Cluster Picker and HIV-TRACE.AIDS Res Hum Retroviruses2017
28274887Bayesian inference reveals ancient origin of simian foamy virus in orangutans.Infect Genet Evol2017
26704616Transmission of Non-B HIV Subtypes in the United Kingdom Is Increasingly Driven by Large Non-Heterosexual Transmission Clusters.J Infect Dis2016
27642070A Direct Comparison of Two Densely Sampled HIV Epidemics: The UK and Switzerland.Sci Rep2016
28008945Using nearly full-genome HIV sequence data improves phylogeny reconstruction in a simulated epidemic.Sci Rep2016
27245152Detailed phylogenetic analysis of primate T-lymphotropic virus type 1 (PTLV-1) sequences from orangutans (Pongo pygmaeus) reveals new insights into the evolutionary history of PTLV-1 in Asia.Infect Genet Evol2016
25724670Analysis of the history and spread of HIV-1 in Uganda using phylodynamics.J Gen Virol2015
26171777Lack of Effectiveness of Antiretroviral Therapy in Preventing HIV Infection in Serodiscordant Couples in Uganda: An Observational Study.PLoS One2015
25849352Geographic and temporal trends in the molecular epidemiology and genetic mechanisms of transmitted HIV-1 drug resistance: an individual-patient- and sequence-level meta-analysis.PLoS Med2015
26030872Correction: Geographic and Temporal Trends in the Molecular Epidemiology and Genetic Mechanisms of Transmitted HIV-1 Drug Resistance: An Individual-Patient- and Sequence-Level Meta-Analysis.PLoS Med2015
24991999Phylogenetic analyses reveal HIV-1 infections between men misclassified as heterosexual transmissions.AIDS2014
24231785Baseline clinical HIV genotypes are a valid measure of transmitted drug resistance within the treatment-naive population.J Acquir Immune Defic Syndr2013
24191891Automated analysis of phylogenetic clusters.BMC Bioinformatics2013
22826337Genetic diversity as a marker for timing infection in HIV-infected patients: evaluation of a 6-month window and comparison with BED.J Infect Dis2012
22693560Adaptive evolution of HIV at HLA epitopes is associated with ethnicity in Canada.PLoS One2012
21216840HIV-1 modulates the tRNA pool to improve translation efficiency.Mol Biol Evol2011
20622676Longitudinal phylogenetic surveillance identifies distinct patterns of cluster dynamics.J Acquir Immune Defic Syndr2010
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Collaborators

Joel O Wertheim
University of California
Co-authored papers 11
Michael P Busch
Vitalant Research Institute
Co-authored papers 2
Robert W Shafer
Co-authored papers 2
P Richard Harrigan
Co-authored papers 2
John P A Ioannidis
Stanford University
Co-authored papers 2
Davey M Smith
University of California San Diego
Co-authored papers 2
Philippe Lemey
Rega Institute, Laboratory of Clinical and Evolutionary Virology
Co-authored papers 2
Mary K Grabowski
Johns Hopkins Bloomberg School of Public Health
Co-authored papers 1
Roger D Kouyos
Institute of Medical Virology, University of Zurich
Co-authored papers 1
Niema Moshiri
Bonita Vista High School, University of California San Diego, University of California, San Diego
Co-authored papers 1
Matthew T Maurano
Institute for Systems Genetics, NYU School of Medicine
Co-authored papers 1
David I Stuart
University of Oxford
Co-authored papers 1
Edward J Mills
McMaster University
Co-authored papers 1
Britt Skaathun
University of California
Co-authored papers 1
Oliver Laeyendecker
Department of Medicine Johns Hopkins Medicine. Baltimore MD 21205USA.
Co-authored papers 1
Siavash Mirarab
University of California San Diego
Co-authored papers 1
Mark S Sulkowski
Johns Hopkins University School of Medicine
Co-authored papers 1
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