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Author Details

David U Gorkin
Center for Epigenomics, University of California San Diego
2009
31
24
PMIDPaper TitleJournal TitlePublished Year
37289818Mapping genetic effects on cell type-specific chromatin accessibility and annotating complex immune trait variants using single nucleus ATAC-seq in peripheral blood.PLoS Genet2023
37289818Mapping genetic effects on cell type-specific chromatin accessibility and annotating complex immune trait variants using single nucleus ATAC-seq in peripheral blood.PLoS Genet2023
35278615Rapid changes in chromatin structure during dedifferentiation of primary hepatocytes in vitro.Genomics2022
35551307Multi-ancestry genetic study of type 2 diabetes highlights the power of diverse populations for discovery and translation.Nat Genet2022
35474001Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2022
35278615Rapid changes in chromatin structure during dedifferentiation of primary hepatocytes in vitro.Genomics2022
35551307Multi-ancestry genetic study of type 2 diabetes highlights the power of diverse populations for discovery and translation.Nat Genet2022
35474001Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2022
33398137Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development.Nature2021
34012112Interpreting type 1 diabetes risk with genetics and single-cell epigenomics.Nature2021
33795864Single-cell chromatin accessibility identifies pancreatic islet cell type- and state-specific regulatory programs of diabetes risk.Nat Genet2021
34256850Coding and noncoding variants in EBF3 are involved in HADDS and simplex autism.Hum Genomics2021
33398174Promoter-proximal CTCF binding promotes distal enhancer-dependent gene activation.Nat Struct Mol Biol2021
33398137Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development.Nature2021
34616068An atlas of gene regulatory elements in adult mouse cerebrum.Nature2021
33795864Single-cell chromatin accessibility identifies pancreatic islet cell type- and state-specific regulatory programs of diabetes risk.Nat Genet2021
34616068An atlas of gene regulatory elements in adult mouse cerebrum.Nature2021
34012112Interpreting type 1 diabetes risk with genetics and single-cell epigenomics.Nature2021
34256850Coding and noncoding variants in EBF3 are involved in HADDS and simplex autism.Hum Genomics2021
33398174Promoter-proximal CTCF binding promotes distal enhancer-dependent gene activation.Nat Struct Mol Biol2021
32728242Spatiotemporal DNA methylome dynamics of the developing mouse fetus.Nature2020
33037424Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development.Nature2020
32728249Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2020
32728242Spatiotemporal DNA methylome dynamics of the developing mouse fetus.Nature2020
33037424Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development.Nature2020
32728249Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2020
31064983Pancreatic islet chromatin accessibility and conformation reveals distal enhancer networks of type 2 diabetes risk.Nat Commun2019
31779666Common DNA sequence variation influences 3-dimensional conformation of the human genome.Genome Biol2019
31064983Pancreatic islet chromatin accessibility and conformation reveals distal enhancer networks of type 2 diabetes risk.Nat Commun2019
31779666Common DNA sequence variation influences 3-dimensional conformation of the human genome.Genome Biol2019
29434377Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation.Nat Neurosci2018
30392959N<sup>6</sup>-methyladenine DNA Modification in Glioblastoma.Cell2018
29434377Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation.Nat Neurosci2018
29497140Author Correction: Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation.Nat Neurosci2018
30392959N<sup>6</sup>-methyladenine DNA Modification in Glioblastoma.Cell2018
29497140Author Correction: Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation.Nat Neurosci2018
28193886Improved regulatory element prediction based on tissue-specific local epigenomic signatures.Proc Natl Acad Sci U S A2017
28193886Improved regulatory element prediction based on tissue-specific local epigenomic signatures.Proc Natl Acad Sci U S A2017
27259200Chromatin Domains: The Unit of Chromosome Organization.Mol Cell2016
27259200Chromatin Domains: The Unit of Chromosome Organization.Mol Cell2016
27703156Genome-wide compendium and functional assessment of in vivo heart enhancers.Nat Commun2016
27703156Genome-wide compendium and functional assessment of in vivo heart enhancers.Nat Commun2016
26206884Genomic analysis reveals distinct mechanisms and functional classes of SOX10-regulated genes in melanocytes.Hum Mol Genet2015
26276636CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function.Cell2015
26206884Genomic analysis reveals distinct mechanisms and functional classes of SOX10-regulated genes in melanocytes.Hum Mol Genet2015
26075791A method to predict the impact of regulatory variants from DNA sequence.Nat Genet2015
26276636CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function.Cell2015
26075791A method to predict the impact of regulatory variants from DNA sequence.Nat Genet2015
24646989Genetics: Closing the distance on obesity culprits.Nature2014
24905166The 3D genome in transcriptional regulation and pluripotency.Cell Stem Cell2014
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Collaborators

Bing Ren
Center for Epigenomics, University of California San Diego
Co-authored papers 17
Len A Pennacchio
Lawrence Berkeley National Laboratory
Co-authored papers 10
Diane E Dickel
Co-authored papers 10
Joshua Chiou
Co-authored papers 9
Axel Visel
Co-authored papers 9
Sebastian Preissl
Center for Epigenomics, University of California San Diego
Co-authored papers 9
Kyle J Gaulton
Co-authored papers 9
Jee Yun Han
Co-authored papers 7
Joseph R Ecker
The Salk Institute for Biological Studies
Co-authored papers 7
Andrew S McCallion
Johns Hopkins University School of Medicine
Co-authored papers 6
Yunjiang Qiu
Ludwig Institute for Cancer Research, University of California
Co-authored papers 6
Yin Shen
Wenzhou Medical University
Co-authored papers 6
Yupeng He
Salk Institute for Biological Studies
Co-authored papers 6
Yuan Zhao
Co-authored papers 5
Bin Li
Co-authored papers 5
Brian A Williams
Co-authored papers 5
William J Pavan
National Human Genome Research Institute, National Institutes of Health
Co-authored papers 5
Maike Sander
Co-authored papers 5
Hui Huang
Co-authored papers 5
Rongxin Fang
Ludwig Institute for Cancer Research, University of California San Diego
Co-authored papers 5
Stacie K Loftus
National Human Genome Research Institute, National Institutes of Health
Co-authored papers 5
Ah Young Lee
Co-authored papers 5
Veena Afzal
Co-authored papers 5
Brandon J Mannion
Co-authored papers 4
Jennifer A Akiyama
Co-authored papers 4
Mei-Lin Okino
Co-authored papers 4
Yanxiao Zhang
Co-authored papers 4
J Michael Cherry
Stanford University
Co-authored papers 4
Elizabeth A Lee
Co-authored papers 3
Yoko Fukuda
Co-authored papers 3
Release 1.2