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Author Details

Jean-Claude Farr??
University of California
1998
39
22
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37530713Convergent and divergent mechanisms of peroxisomal and mitochondrial division.J Cell Biol2023
35011719Recognition and Chaperoning by Pex19, Followed by Trafficking and Membrane Insertion of the Peroxisome Proliferation Protein, Pex11.Cells2022
35467529OXPHOS deficiencies affect peroxisome proliferation by downregulating genes controlled by the SNF1 signaling pathway.Elife2022
33046344Balancing the Opposing Principles That Govern Peroxisome Homeostasis.Trends Biochem Sci2021
34063066BiFC Method Based on Intraorganellar Protein Crowding Detects Oleate-Dependent Peroxisomal Targeting of <i>Pichia pastoris</i> Malate Dehydrogenase.Int J Mol Sci2021
31007124The autophagic degradation of cytosolic pools of peroxisomal proteins by a new selective pathway.Autophagy2020
30530632Peroxisome biogenesis, membrane contact sites, and quality control.EMBO Rep2019
29940807TRIM37 deficiency induces autophagy through deregulating the MTORC1-TFEB axis.Autophagy2018
28724525TRIM37, a novel E3 ligase for PEX5-mediated peroxisomal matrix protein import.J Cell Biol2017
28486053Active Interaction Mapping as a tool to elucidate hierarchical functions of biological processes.Autophagy2017
28132844Active Interaction Mapping Reveals the Hierarchical Organization of Autophagy.Mol Cell2017
29037759A New Yeast Peroxin, Pex36, a Functional Homolog of Mammalian PEX16, Functions in the ER-to-Peroxisome Traffic of Peroxisomal Membrane Proteins.J Mol Biol2017
27381245Mechanistic insights into selective autophagy pathways: lessons from yeast.Nat Rev Mol Cell Biol2016
25694426Peroxisomal Pex3 activates selective autophagy of peroxisomes via interaction with the pexophagy receptor Atg30.J Biol Chem2015
23559066Phosphorylation of mitophagy and pexophagy receptors coordinates their interaction with Atg8 and Atg11.EMBO Rep2013
22966490Guidelines for the use and interpretation of assays for monitoring autophagy.Autophagy2012
23285127RNA editing in mitochondrial trans-introns is required for splicing.PLoS One2012
21169734Atg35, a micropexophagy-specific protein that regulates micropexophagic apparatus formation in Pichia pastoris.Autophagy2011
21241888Rallying the exocyst as an autophagy scaffold.Cell2011
20083110Molecular mechanism and physiological role of pexophagy.FEBS Lett2010
20385774A yeast MAPK cascade regulates pexophagy but not other autophagy pathways.J Cell Biol2010
19946209Roles of Pichia pastoris Uvrag in vacuolar protein sorting and the phosphatidylinositol 3-kinase complex in phagophore elongation in autophagy pathways.Autophagy2010
19515549Turnover of organelles by autophagy in yeast.Curr Opin Cell Biol2009
19605559Peroxisome size provides insights into the function of autophagy-related proteins.Mol Biol Cell2009
18331717PpAtg30 tags peroxisomes for turnover by selective autophagy.Dev Cell2008
17329961A cytoplasm to vacuole targeting pathway in P. pastoris.Autophagy2007
17951647Localization of proteins and organelles using fluorescence microscopy.Methods Mol Biol2007
17632052A ubiquitin-like protein involved in membrane fusion.Cell2007
17662855In organello gene expression and RNA editing studies by electroporation-mediated transformation of isolated plant mitochondria.Methods Enzymol2007
17329963Autophagy-related pathways and specific role of sterol glucoside in yeasts.Autophagy2007
16874081Atg28, a novel coiled-coil protein involved in autophagic degradation of peroxisomes in the methylotrophic yeast Pichia pastoris.Autophagy2006
16352866Gene expression studies in isolated mitochondria: Solanum tuberosum rps10 is recognized by cognate potato but not by the transcription, splicing and editing machinery of wheat mitochondria.Nucleic Acids Res2005
15350980Peroxisome turnover by micropexophagy: an autophagy-related process.Trends Cell Biol2004
15585663Different patterns in the recognition of editing sites in plant mitochondria.Nucleic Acids Res2004
11851920RNA splicing in higher plant mitochondria: determination of functional elements in group II intron from a chimeric cox II gene in electroporated wheat mitochondria.Plant J2002
11410655Gene expression in isolated plant mitochondria: high fidelity of transcription, splicing and editing of a transgene product in electroporated organelles.Nucleic Acids Res2001
11564858cis Recognition elements in plant mitochondrion RNA editing.Mol Cell Biol2001
10527420The mat-r open reading frame is transcribed from a non-canonical promoter and contains an internal promoter to co-transcribe exons nad1e and nad5III in wheat mitochondria.Plant Mol Biol1999
9644205Editing status of mat-r transcripts in mitochondria from two plant species: C-to-U changes occur in putative functional RT and maturase domains.Curr Genet1998
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Collaborators

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Co-authored papers 2
University of California
Co-authored papers 2
Yale University
Co-authored papers 1
Harvard Medical School
Co-authored papers 1
Whitehead Institute for Biomedical Research and Massachusetts Institute of Technology
Co-authored papers 1
Suzhou Institute of Nano-Tech and Nano-Bionics (SINANO), Chinese Academy of Sciences
Co-authored papers 1
New York State Psychiatric Institute, Research Foundation for Mental Hygiene
Co-authored papers 1
University at Albany
Co-authored papers 1
Instituto Universitario de Oncologia, Universidad de Oviedo
Co-authored papers 1
University of Pennsylvania
Co-authored papers 1
CNRS UMR9018, Institut Gustave Roussy, Universite Paris-Saclay
Co-authored papers 1
Institute for Neurodegenerative Diseases, University of California San Francisco
Co-authored papers 1
Co-authored papers 1
Dalhousie University
Co-authored papers 1
Co-authored papers 1
Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill
Co-authored papers 1
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Buck Institute for Research on Aging
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University of California San Diego
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MD Anderson Cancer Center
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Monterotondo Mouse Clinic (MMC), Italian National Research Council (CNR)
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Albert Einstein College of Medicine
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University of Warwick
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