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Author Details

Kasper D Hansen
Johns Hopkins University School of Medicine
2004
76
38
PMIDPaper TitleJournal TitlePublished Year
38015625A mouse model of Weaver syndrome displays overgrowth and excess osteogenesis reversible with KDM6A/6B inhibition.JCI Insight2024
38015625A mouse model of Weaver syndrome displays overgrowth and excess osteogenesis reversible with KDM6A/6B inhibition.JCI Insight2024
36754293A functional genomics pipeline to identify high-value asthma and allergy CpGs in the human methylome.J Allergy Clin Immunol2023
37577516Neuron-specific chromatin disruption at CpG islands and aging-related regions in Kabuki syndrome mice.bioRxiv2023
37885016Pumping the brakes on RNA velocity by understanding and interpreting RNA velocity estimates.Genome Biol2023
37871105Precision pharmacological reversal of strain-specific diet-induced metabolic syndrome in mice informed by epigenetic and transcriptional regulation.PLoS Genet2023
36874953recountmethylation enables flexible analysis of public blood DNA methylation array data.Bioinform Adv2023
36754293A functional genomics pipeline to identify high-value asthma and allergy CpGs in the human methylome.J Allergy Clin Immunol2023
37257175Quantification and statistical modeling of droplet-based single-nucleus RNA-sequencing data.Biostatistics2023
37429865nnSVG for the scalable identification of spatially variable genes using nearest-neighbor Gaussian processes.Nat Commun2023
36989344Comprehensive DNA Methylation Analysis Indicates That Pancreatic Intraepithelial Neoplasia Lesions Are Acinar-Derived and Epigenetically Primed for Carcinogenesis.Cancer Res2023
37425751Novel mouse model of Weaver syndrome displays overgrowth and excess osteogenesis reversible with KDM6A/6B inhibition.bioRxiv2023
37163127Precision pharmacological reversal of genotype-specific diet-induced metabolic syndrome in mice informed by transcriptional regulation.bioRxiv2023
37885016Pumping the brakes on RNA velocity by understanding and interpreting RNA velocity estimates.Genome Biol2023
37577516Neuron-specific chromatin disruption at CpG islands and aging-related regions in Kabuki syndrome mice.bioRxiv2023
37871105Precision pharmacological reversal of strain-specific diet-induced metabolic syndrome in mice informed by epigenetic and transcriptional regulation.PLoS Genet2023
37425751Novel mouse model of Weaver syndrome displays overgrowth and excess osteogenesis reversible with KDM6A/6B inhibition.bioRxiv2023
37257175Quantification and statistical modeling of droplet-based single-nucleus RNA-sequencing data.Biostatistics2023
36989344Comprehensive DNA Methylation Analysis Indicates That Pancreatic Intraepithelial Neoplasia Lesions Are Acinar-Derived and Epigenetically Primed for Carcinogenesis.Cancer Res2023
37429865nnSVG for the scalable identification of spatially variable genes using nearest-neighbor Gaussian processes.Nat Commun2023
37163127Precision pharmacological reversal of genotype-specific diet-induced metabolic syndrome in mice informed by transcriptional regulation.bioRxiv2023
36874953recountmethylation enables flexible analysis of public blood DNA methylation array data.Bioinform Adv2023
34843755A metabolomics approach identified toxins associated with uremic symptoms in advanced chronic kidney disease.Kidney Int2022
35353807Addressing the mean-correlation relationship in co-expression analysis.PLoS Comput Biol2022
34843755A metabolomics approach identified toxins associated with uremic symptoms in advanced chronic kidney disease.Kidney Int2022
35145108A mammalian methylation array for profiling methylation levels at conserved sequences.Nat Commun2022
35101061Universal prediction of cell-cycle position using transfer learning.Genome Biol2022
35353807Addressing the mean-correlation relationship in co-expression analysis.PLoS Comput Biol2022
35101061Universal prediction of cell-cycle position using transfer learning.Genome Biol2022
35145108A mammalian methylation array for profiling methylation levels at conserved sequences.Nat Commun2022
33937763Human methylome variation across Infinium 450K data on the Gene Expression Omnibus.NAR Genom Bioinform2021
33536572Highly multiplexed oligonucleotide probe-ligation testing enables efficient extraction-free SARS-CoV-2 detection and viral genotyping.Mod Pathol2021
33888138Human brain region-specific variably methylated regions are enriched for heritability of distinct neuropsychiatric traits.Genome Biol2021
33937763Human methylome variation across Infinium 450K data on the Gene Expression Omnibus.NAR Genom Bioinform2021
34463256Leveraging the Mendelian disorders of the epigenetic machinery to systematically map functional epigenetic variation.Elife2021
34844637recount3: summaries and queries for large-scale RNA-seq expression and splicing.Genome Biol2021
33536572Highly multiplexed oligonucleotide probe-ligation testing enables efficient extraction-free SARS-CoV-2 detection and viral genotyping.Mod Pathol2021
33888138Human brain region-specific variably methylated regions are enriched for heritability of distinct neuropsychiatric traits.Genome Biol2021
34463256Leveraging the Mendelian disorders of the epigenetic machinery to systematically map functional epigenetic variation.Elife2021
34844637recount3: summaries and queries for large-scale RNA-seq expression and splicing.Genome Biol2021
31503409A screen of 1,049 schizophrenia and 30 Alzheimer's-associated variants for regulatory potential.Am J Med Genet B Neuropsychiatr Genet2020
32577648Highly multiplexed oligonucleotide probe-ligation testing enables efficient extraction-free SARS-CoV-2 detection and viral genotyping.bioRxiv2020
32800095Promoter CpG Density Predicts Downstream Gene Loss-of-Function Intolerance.Am J Hum Genet2020
33230324Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing.Nat Methods2020
32780721Metabolic effects of air pollution exposure and reversibility.J Clin Invest2020
31503409A screen of 1,049 schizophrenia and 30 Alzheimer's-associated variants for regulatory potential.Am J Med Genet B Neuropsychiatr Genet2020
33230324Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing.Nat Methods2020
32577648Highly multiplexed oligonucleotide probe-ligation testing enables efficient extraction-free SARS-CoV-2 detection and viral genotyping.bioRxiv2020
32800095Promoter CpG Density Predicts Downstream Gene Loss-of-Function Intolerance.Am J Hum Genet2020
32780721Metabolic effects of air pollution exposure and reversibility.J Clin Invest2020
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Collaborators

Rafael A Irizarry
Dana-Farber Cancer Institute
Co-authored papers 10
Jeffrey T Leek
Co-authored papers 7
Loyal A Goff
Johns Hopkins University School of Medicine
Co-authored papers 6
Abhinav Nellore
Oregon Health & Science University
Co-authored papers 6
Andrew E Jaffe
Co-authored papers 5
Christine Ladd-Acosta
Co-authored papers 4
Steven E Brenner
University of California berkeley
Co-authored papers 3
Sean Davis
Johns Hopkins School of Medicine, National Cancer Institute, Princeton University, University of Colorado Anschutz Medical Campus, University of Pittsburgh, University of Washington
Co-authored papers 3
H??ctor Corrada Bravo
University of Maryland College Park, College Park
Co-authored papers 3
Susan R Davis
Co-authored papers 3
Vincent J Carey
Brigham and Women's Hospital, Harvard Medical School
Co-authored papers 3
Margaret Daniele Fallin
Co-authored papers 3
Levi Waldron
City University of New York School of Public Health
Co-authored papers 3
Martin Morgan
Roswell Park Comprehensive Cancer Center
Co-authored papers 3
Andrew Pekosz
Co-authored papers 2
Angela Re
Fondazione Istituto Italiano di Tecnologia
Co-authored papers 2
Genevieve L Stein-O'Brien
Johns Hopkins School of Medicine
Co-authored papers 2
Christopher Wilks
Johns Hopkins University
Co-authored papers 2
Richard E Rothman
Johns Hopkins University School of Medicine
Co-authored papers 2
Stephanie C Hicks
Johns Hopkins Bloomberg School of Public Health
Co-authored papers 2
Aedin C Culhane
Dana-Farber Cancer Institute & Harvard School of Public Health
Co-authored papers 2
Laurent Gatto
de Duve Institute, Universite catholique de Louvain
Co-authored papers 2
Benjamin Haibe-Kains
Princess Margaret Cancer Centre, University Health Network
Co-authored papers 2
David Gomez-Cabrero
King Abdullah University of Science and Technology
Co-authored papers 2
Robert A Wood
Johns Hopkins School of Medicine
Co-authored papers 2
Peter F Hickey
The Walter and Eliza Hall Institute of Medical Research
Co-authored papers 2
David W Threadgill
College Station
Co-authored papers 2
Reid F Thompson
Oregon Health and Sciences University
Co-authored papers 2
Marcel Ramos
Graduate School of Public Health and Health Policy, City University of New York
Co-authored papers 2
Dimitrios Avramopoulos
Johns Hopkins School of Medicine
Co-authored papers 2
Release 1.2