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Author Details

Shengqiang Shu
US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
1990
76
38
PMIDPaper TitleJournal TitlePublished Year
36946261A view of the pan-genome of domesticated Cowpea (Vigna unguiculata [L.] Walp.).Plant Genome2024
37870930The first two chromosome-scale genome assemblies of American hazelnut enable comparative genomic analysis of the genus Corylus.Plant Biotechnol J2024
36946261A view of the pan-genome of domesticated Cowpea (Vigna unguiculata [L.] Walp.).Plant Genome2024
37870930The first two chromosome-scale genome assemblies of American hazelnut enable comparative genomic analysis of the genus Corylus.Plant Biotechnol J2024
36218464Multiple origins, one evolutionary trajectory: gradual evolution characterizes distinct lineages of allotetraploid Brachypodium.Genetics2023
36218464Multiple origins, one evolutionary trajectory: gradual evolution characterizes distinct lineages of allotetraploid Brachypodium.Genetics2023
36208288A contiguous de novo genome assembly of sugar beet EL10 (Beta vulgaris L.).DNA Res2023
37675609Haplotype-resolved genome assembly of Populus tremula ÿ P. alba reveals aspen-specific megabase satellite DNA.Plant J2023
37883711The reference genome and abiotic stress responses of the model perennial grass Brachypodium sylvaticum.G3 (Bethesda)2023
36562730The Chlamydomonas Genome Project, version 6: Reference assemblies for mating-type plus and minus strains reveal extensive structural mutation in the laboratory.Plant Cell2023
36747050Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics.Nat Plants2023
37526283JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom.Nucleic Acids Res2023
37526283JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom.Nucleic Acids Res2023
37883711The reference genome and abiotic stress responses of the model perennial grass Brachypodium sylvaticum.G3 (Bethesda)2023
37675609Haplotype-resolved genome assembly of Populus tremula ÿ P. alba reveals aspen-specific megabase satellite DNA.Plant J2023
36747050Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics.Nat Plants2023
36562730The Chlamydomonas Genome Project, version 6: Reference assemblies for mating-type plus and minus strains reveal extensive structural mutation in the laboratory.Plant Cell2023
36208288A contiguous de novo genome assembly of sugar beet EL10 (Beta vulgaris L.).DNA Res2023
35298644Multiplex knockout of trichome-regulating MYB duplicates in hybrid poplar using a single gRNA.Plant Physiol2022
36109148The western redcedar genome reveals low genetic diversity in a self-compatible conifer.Genome Res2022
35422045Chromosome evolution and the genetic basis of agronomically important traits in greater yam.Nat Commun2022
36050461Dynamic genome evolution in a model fern.Nat Plants2022
36513676Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass.Nat Commun2022
35298644Multiplex knockout of trichome-regulating MYB duplicates in hybrid poplar using a single gRNA.Plant Physiol2022
35422045Chromosome evolution and the genetic basis of agronomically important traits in greater yam.Nat Commun2022
36513676Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass.Nat Commun2022
36109148The western redcedar genome reveals low genetic diversity in a self-compatible conifer.Genome Res2022
36050461Dynamic genome evolution in a model fern.Nat Plants2022
33972666Pests, diseases, and aridity have shaped the genome of Corymbia citriodora.Commun Biol2021
33972666Pests, diseases, and aridity have shaped the genome of Corymbia citriodora.Commun Biol2021
34226565Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding.Nat Commun2021
34275202Genomic variation within the maize stiff-stalk heterotic germplasm pool.Plant Genome2021
33574224Genome sequence and evolution of Betula platyphylla.Hortic Res2021
33519836Hybridization History and Repetitive Element Content in the Genome of a Homoploid Hybrid, <i>Yucca gloriosa</i> (Asparagaceae).Front Plant Sci2021
33505029Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass.Nature2021
34193417Gene-rich UV sex chromosomes harbor conserved regulators of sexual development.Sci Adv2021
33863805The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible.Genome Res2021
33574224Genome sequence and evolution of Betula platyphylla.Hortic Res2021
33519836Hybridization History and Repetitive Element Content in the Genome of a Homoploid Hybrid, <i>Yucca gloriosa</i> (Asparagaceae).Front Plant Sci2021
33505029Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass.Nature2021
33863805The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible.Genome Res2021
34275202Genomic variation within the maize stiff-stalk heterotic germplasm pool.Plant Genome2021
34193417Gene-rich UV sex chromosomes harbor conserved regulators of sexual development.Sci Adv2021
34226565Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding.Nat Commun2021
32313247Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement.Nat Genet2020
32313247Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement.Nat Genet2020
32059685A willow sex chromosome reveals convergent evolution of complex palindromic repeats.Genome Biol2020
32985030A chromosome-scale reference genome of trifoliate orange (Poncirus trifoliata) provides insights into disease resistance, cold tolerance and genome evolution in Citrus.Plant J2020
33020633A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci.Nat Biotechnol2020
33116128Genome biology of the paleotetraploid perennial biomass crop Miscanthus.Nat Commun2020
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Collaborators

Co-authored papers 9
Joint Genome Institute
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US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 6
US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 6
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Arizona Genomics Institute, University of Arizona
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International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences
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Lawrence Berkeley National Laboratory
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USDA-Agricultural Research Service, Corn Insects and Crop Genetics Research Unit
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The University of Florida
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Wellcome Sanger Institute
Co-authored papers 3
University of Marburg
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Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University
Co-authored papers 3
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University of California berkeley
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Lawrence Berkeley National Laboratory
Co-authored papers 3
Oak Ridge National Laboratory
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National Center for Genome Resources
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University of Cambridge
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University of California Riverside
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University of California davis
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Lawrence Berkeley National Laboratory
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US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
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