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Author Details

John Deck
University of California berkeley
2012
21
11
PMIDPaper TitleJournal TitlePublished Year
36704891Importance of timely metadata curation to the global surveillance of genetic diversity.Conserv Biol2023
36704891Importance of timely metadata curation to the global surveillance of genetic diversity.Conserv Biol2023
36212022A solution to the challenges of interdisciplinary aggregation and use of specimen-level trait data.iScience2022
36212022A solution to the challenges of interdisciplinary aggregation and use of specimen-level trait data.iScience2022
33960385Internet of Samples (iSamples): Toward an interdisciplinary cyberinfrastructure for material samples.Gigascience2021
33960385Internet of Samples (iSamples): Toward an interdisciplinary cyberinfrastructure for material samples.Gigascience2021
33031625Building a global genomics observatory: Using GEOME (the Genomic Observatories Metadatabase) to expedite and improve deposition and retrieval of genetic data and metadata for biodiversity research.Mol Ecol Resour2020
33031625Building a global genomics observatory: Using GEOME (the Genomic Observatories Metadatabase) to expedite and improve deposition and retrieval of genetic data and metadata for biodiversity research.Mol Ecol Resour2020
30937223Integrating herbarium specimen observations into global phenology data systems.Appl Plant Sci2019
31712691The effect of urbanization on plant phenology depends on regional temperature.Nat Ecol Evol2019
30937223Integrating herbarium specimen observations into global phenology data systems.Appl Plant Sci2019
31712691The effect of urbanization on plant phenology depends on regional temperature.Nat Ecol Evol2019
29765382The Plant Phenology Ontology: A New Informatics Resource for Large-Scale Integration of Plant Phenology Data.Front Plant Sci2018
29765382The Plant Phenology Ontology: A New Informatics Resource for Large-Scale Integration of Plant Phenology Data.Front Plant Sci2018
28662064Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data.PLoS Biol2017
28771471The Genomic Observatories Metadatabase (GeOMe): A new repository for field and sampling event metadata associated with genetic samples.PLoS Biol2017
28662064Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data.PLoS Biol2017
28771471The Genomic Observatories Metadatabase (GeOMe): A new repository for field and sampling event metadata associated with genetic samples.PLoS Biol2017
26998258Simulating social-ecological systems: the Island Digital Ecosystem Avatars (IDEA) consortium.Gigascience2016
26998258Simulating social-ecological systems: the Island Digital Ecosystem Avatars (IDEA) consortium.Gigascience2016
27694206The Global Genome Biodiversity Network (GGBN) Data Standard specification.Database (Oxford)2016
27694206The Global Genome Biodiversity Network (GGBN) Data Standard specification.Database (Oxford)2016
25901117Community next steps for making globally unique identifiers work for biocollections data.Zookeys2015
25901117Community next steps for making globally unique identifiers work for biocollections data.Zookeys2015
24595056Semantics in support of biodiversity knowledge discovery: an introduction to the biological collections ontology and related ontologies.PLoS One2014
25470125The trouble with triplets in biodiversity informatics: a data-driven case against current identifier practices.PLoS One2014
24606731The founding charter of the Genomic Observatories Network.Gigascience2014
25073721The BiSciCol Triplifier: bringing biodiversity data to the Semantic Web.BMC Bioinformatics2014
24595056Semantics in support of biodiversity knowledge discovery: an introduction to the biological collections ontology and related ontologies.PLoS One2014
25470125The trouble with triplets in biodiversity informatics: a data-driven case against current identifier practices.PLoS One2014
25073721The BiSciCol Triplifier: bringing biodiversity data to the Semantic Web.BMC Bioinformatics2014
24606731The founding charter of the Genomic Observatories Network.Gigascience2014
23991264Clarifying concepts and terms in biodiversity informatics.Stand Genomic Sci2013
23991264Clarifying concepts and terms in biodiversity informatics.Stand Genomic Sci2013
22684960Field information management systems for DNA barcoding.Methods Mol Biol2012
23587188A call for an international network of genomic observatories (GOs).Gigascience2012
23409219RCN4GSC Meeting Report: Initiating a Testbed for Managing Data at the Interface of Biodiversity and Genomics/Metagenomics, May 2011.Stand Genomic Sci2012
23451295Meeting Report: Hackathon-Workshop on Darwin Core and MIxS Standards Alignment (February 2012).Stand Genomic Sci2012
23451295Meeting Report: Hackathon-Workshop on Darwin Core and MIxS Standards Alignment (February 2012).Stand Genomic Sci2012
23409219RCN4GSC Meeting Report: Initiating a Testbed for Managing Data at the Interface of Biodiversity and Genomics/Metagenomics, May 2011.Stand Genomic Sci2012
23587188A call for an international network of genomic observatories (GOs).Gigascience2012
22684960Field information management systems for DNA barcoding.Methods Mol Biol2012
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Collaborators

Brian J Stucky
University of Florida
Co-authored papers 7
Ramona L Walls
Critical Path Institute
Co-authored papers 7
Norman Morrison
European Bioinformatics Institute
Co-authored papers 5
Dawn Field
Biodiversity Institute, University of Oxford
Co-authored papers 4
John Wooley
University of California
Co-authored papers 4
Renzo Kottmann
Max Planck Institute for Marine Microbiology
Co-authored papers 4
Linda A Amaral-Zettler
NIOZ Royal Netherlands Institute for Sea Research
Co-authored papers 3
John Kunze
University of California berkeley
Co-authored papers 3
Katharine B Barker
Auburn University.
Co-authored papers 3
Tom Conlin
Linus Pauling institute, Oregon State University
Co-authored papers 3
Susanna-Assunta Sansone
Oxford e-Research Centre, University of Oxford
Co-authored papers 3
Jack A Gilbert
Scripps Institution of Oceanography, University of California San Diego
Co-authored papers 2
Pier Luigi Buttigieg
Alfred Wegener Institute
Co-authored papers 2
Pelin Yilmaz
Co-authored papers 2
Philippe Rocca-Serra
University of Oxford
Co-authored papers 2
Katherine Wolstencroft
Leiden Institute of Advanced Computer Science, Leiden University
Co-authored papers 1
Alan R Williams
The University of Manchester
Co-authored papers 1
Peter Dawyndt
Co-authored papers 1
Jason Bobe
Co-authored papers 1
Peter E Midford
University of Kansas
Co-authored papers 1
Jeffrey S Grethe
university of california san diego
Co-authored papers 1
Barry Smith
University at Buffalo
Co-authored papers 1
Folker Meyer
Institute for Artificial Intelligence, University of Duisburg-Essen
Co-authored papers 1
Tim Robertson
Universitetsparken 15
Co-authored papers 1
Janna Hastings
Institute for Implementation Science in Health Care, University of Zurich
Co-authored papers 1
Johanna McEntyre
EMBL's European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 1
Nick Juty
University of Manchester
Co-authored papers 1
Wolfgang M??ller
Heidelberg Institute for Theoretical Studies (HITS gGmbH)
Co-authored papers 1
Nathalie Conte
The Wellcome Trust Sanger Institute
Co-authored papers 1
Neil Swainston
Institute of Systems, University of Liverpool
Co-authored papers 1
Release 1.2