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Author Details

Terrence S Furey
University of North Carolina at Chapel Hill
2000
85
43
Nathan Sheffield (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36336910Intestinal epithelial cell barrier dysfunction and elevated Angiopoietin-like 4 identified in orally susceptible peanut allergy model.Clin Exp Allergy2023
36336910Intestinal epithelial cell barrier dysfunction and elevated Angiopoietin-like 4 identified in orally susceptible peanut allergy model.Clin Exp Allergy2023
38019944ROCCO: a robust method for detection of open chromatin via convex optimization.Bioinformatics2023
36712050CoVar: A generalizable machine learning approach to identify the coordinated regulators driving variational gene expression.bioRxiv2023
37246822Toxicological and pharmacokinetic properties of sucralose-6-acetate and its parent sucralose: <i>in vitro</i> screening assays.J Toxicol Environ Health B Crit Rev2023
38019944ROCCO: a robust method for detection of open chromatin via convex optimization.Bioinformatics2023
37246822Toxicological and pharmacokinetic properties of sucralose-6-acetate and its parent sucralose: <i>in vitro</i> screening assays.J Toxicol Environ Health B Crit Rev2023
36712050CoVar: A generalizable machine learning approach to identify the coordinated regulators driving variational gene expression.bioRxiv2023
34755540Integrative analysis reveals mouse strain-dependent responses to acute ozone exposure associated with airway macrophage transcriptional activity.Am J Physiol Lung Cell Mol Physiol2022
35401533BET Protein Inhibition Regulates Macrophage Chromatin Accessibility and Microbiota-Dependent Colitis.Front Immunol2022
35158099Single-Cell Analysis Reveals Unexpected Cellular Changes and Transposon Expression Signatures in the Colonic Epithelium of Treatment-Naïve Adult Crohn's Disease Patients.Cell Mol Gastroenterol Hepatol2022
34755540Integrative analysis reveals mouse strain-dependent responses to acute ozone exposure associated with airway macrophage transcriptional activity.Am J Physiol Lung Cell Mol Physiol2022
34995504Subcutaneous adipose tissue splice quantitative trait loci reveal differences in isoform usage associated with cardiometabolic traits.Am J Hum Genet2022
35401533BET Protein Inhibition Regulates Macrophage Chromatin Accessibility and Microbiota-Dependent Colitis.Front Immunol2022
35158099Single-Cell Analysis Reveals Unexpected Cellular Changes and Transposon Expression Signatures in the Colonic Epithelium of Treatment-Naïve Adult Crohn's Disease Patients.Cell Mol Gastroenterol Hepatol2022
34995504Subcutaneous adipose tissue splice quantitative trait loci reveal differences in isoform usage associated with cardiometabolic traits.Am J Hum Genet2022
34188154Increased colonic expression of ACE2 associates with poor prognosis in Crohn's disease.Sci Rep2021
34188154Increased colonic expression of ACE2 associates with poor prognosis in Crohn's disease.Sci Rep2021
34389789A machine learning approach identifies 5-ASA and ulcerative colitis as being linked with higher COVID-19 mortality in patients with IBD.Sci Rep2021
34389789A machine learning approach identifies 5-ASA and ulcerative colitis as being linked with higher COVID-19 mortality in patients with IBD.Sci Rep2021
32561494Decreased Colonic Activin Receptor-Like Kinase 1 Disrupts Epithelial Barrier Integrity in Patients With Crohn's Disease.Cell Mol Gastroenterol Hepatol2020
31961859Integrative QTL analysis of gene expression and chromatin accessibility identifies multi-tissue patterns of genetic regulation.PLoS Genet2020
32561494Decreased Colonic Activin Receptor-Like Kinase 1 Disrupts Epithelial Barrier Integrity in Patients With Crohn's Disease.Cell Mol Gastroenterol Hepatol2020
33269348Increased Colonic Expression of ACE2 Associates with Poor Prognosis in Crohn's disease.bioRxiv2020
31961859Integrative QTL analysis of gene expression and chromatin accessibility identifies multi-tissue patterns of genetic regulation.PLoS Genet2020
33269348Increased Colonic Expression of ACE2 Associates with Poor Prognosis in Crohn's disease.bioRxiv2020
30787446Redefining the IBDs using genome-scale molecular phenotyping.Nat Rev Gastroenterol Hepatol2019
31564431Adipose Tissue Gene Expression Associations Reveal Hundreds of Candidate Genes for Cardiometabolic Traits.Am J Hum Genet2019
30787446Redefining the IBDs using genome-scale molecular phenotyping.Nat Rev Gastroenterol Hepatol2019
31564431Adipose Tissue Gene Expression Associations Reveal Hundreds of Candidate Genes for Cardiometabolic Traits.Am J Hum Genet2019
27742763Molecular classification of Crohn's disease reveals two clinically relevant subtypes.Gut2018
30282822Colonic epithelial miR-31 associates with the development of Crohn's phenotypes.JCI Insight2018
29429127Tissue- and strain-specific effects of a genotoxic carcinogen 1,3-butadiene on chromatin and transcription.Mamm Genome2018
27742763Molecular classification of Crohn's disease reveals two clinically relevant subtypes.Gut2018
30282822Colonic epithelial miR-31 associates with the development of Crohn's phenotypes.JCI Insight2018
29429127Tissue- and strain-specific effects of a genotoxic carcinogen 1,3-butadiene on chromatin and transcription.Mamm Genome2018
27993786DeFCoM: analysis and modeling of transcription factor binding sites using a motif-centric genomic footprinter.Bioinformatics2017
28764645Correcting nucleotide-specific biases in high-throughput sequencing data.BMC Bioinformatics2017
28850571Genomic dissection of conserved transcriptional regulation in intestinal epithelial cells.PLoS Biol2017
29038090Variation in DNA-Damage Responses to an Inhalational Carcinogen (1,3-Butadiene) in Relation to Strain-Specific Differences in Chromatin Accessibility and Gene Transcription Profiles in C57BL/6J and CAST/EiJ Mice.Environ Health Perspect2017
29276797Genetic and epigenetic determinants of inter-individual variability in responses to toxicants.Curr Opin Toxicol2017
27993786DeFCoM: analysis and modeling of transcription factor binding sites using a motif-centric genomic footprinter.Bioinformatics2017
29038090Variation in DNA-Damage Responses to an Inhalational Carcinogen (1,3-Butadiene) in Relation to Strain-Specific Differences in Chromatin Accessibility and Gene Transcription Profiles in C57BL/6J and CAST/EiJ Mice.Environ Health Perspect2017
29276797Genetic and epigenetic determinants of inter-individual variability in responses to toxicants.Curr Opin Toxicol2017
28850571Genomic dissection of conserved transcriptional regulation in intestinal epithelial cells.PLoS Biol2017
28764645Correcting nucleotide-specific biases in high-throughput sequencing data.BMC Bioinformatics2017
26833246New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.Nat Commun2016
26833246New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.Nat Commun2016
27159132Alterations to chromatin in intestinal macrophages link IL-10 deficiency to inappropriate inflammatory responses.Eur J Immunol2016
26543175A hidden Markov random field-based Bayesian method for the detection of long-range chromosomal interactions in Hi-C data.Bioinformatics2016
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Collaborators

Gregory E Crawford
Center for Genomic & Computational Biology, Duke University
Co-authored papers 24
David Haussler
Genomics Institute, University of California Santa Cruz
Co-authored papers 17
Lingyun Song
Center for Genomic & Computational Biology, Duke University
Co-authored papers 16
William James Kent
Co-authored papers 10
Jeremy M Simon
University of North Carolina
Co-authored papers 9
Alan P Boyle
University of Michigan ann arbor
Co-authored papers 9
Praveen Sethupathy
Cornell University
Co-authored papers 9
Ewan Birney
European Bioinformatics Institute
Co-authored papers 9
Jason D Lieb
The University of Chicago
Co-authored papers 9
Vishwanath R Iyer
Indian Institute of Technology Bombay
Co-authored papers 8
Bum-Kyu Lee
Cancer Research Center, University at Albany, State University of New York
Co-authored papers 7
Richard K Wilson
The Ohio State University
Co-authored papers 7
Francis S Collins
University of Michigan ann arbor
Co-authored papers 7
Evan E Eichler
University of Washington
Co-authored papers 7
Nathan Sheffield (CM4AI)
University of Virginia
Co-authored papers 6
LaDeana W Hillier
University of Washington
Co-authored papers 6
Darin London
Co-authored papers 6
John D McPherson
Ontario Institute for Cancer Research
Co-authored papers 6
Webb Miller
Co-authored papers 6
Donna Karolchik
Co-authored papers 5
Robert Baertsch
Center for Biomolecular Science and Engineering, University of California
Co-authored papers 5
Elaine R Mardis
The Ohio State University
Co-authored papers 5
Mark Diekhans
Genomics Institute, University of California Santa Cruz
Co-authored papers 5
Robert S Fulton
McDonnell Genome Institute, Washington University School of Medicine
Co-authored papers 5
Angie S Hinrichs
Co-authored papers 5
Tina Graves
McDonnell Genome Institute, Washington University
Co-authored papers 5
Marco A Marra
University of British Columbia
Co-authored papers 5
Peer Bork
University of Wurzburg
Co-authored papers 5
Alexias Safi
Center for Genomic and Computational Biology, Duke University Medical Center
Co-authored papers 5
Karen L Mohlke
Co-authored papers 5
Release 1.2