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Author Details

Oliver Kohlbacher
Max Planck Institute for Developmental Biology
2000
235
55
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36890446The personalized cancer network explorer (PeCaX) as a visual analytics tool to support molecular tumor boards.BMC Bioinformatics2023
37280276The German Network for Personalized Medicine to enhance patient care and translational research.Nat Med2023
36823366The HLA ligandome of oropharyngeal squamous cell carcinomas reveals shared tumour-exclusive peptides for semi-personalised vaccination.Br J Cancer2023
36890446The personalized cancer network explorer (PeCaX) as a visual analytics tool to support molecular tumor boards.BMC Bioinformatics2023
37173725UmetaFlow: an untargeted metabolomics workflow for high-throughput data processing and analysis.J Cheminform2023
36915613Clinical outcome of biomarker-guided therapies in adult patients with tumors of the nervous system.Neurooncol Adv2023
36597038PREDICT-juvenile-stroke: PRospective evaluation of a prediction score determining individual clinical outcome three months after ischemic stroke in young adults - a study protocol.BMC Neurol2023
37280276The German Network for Personalized Medicine to enhance patient care and translational research.Nat Med2023
37173725UmetaFlow: an untargeted metabolomics workflow for high-throughput data processing and analysis.J Cheminform2023
36915613Clinical outcome of biomarker-guided therapies in adult patients with tumors of the nervous system.Neurooncol Adv2023
36823366The HLA ligandome of oropharyngeal squamous cell carcinomas reveals shared tumour-exclusive peptides for semi-personalised vaccination.Br J Cancer2023
36597038PREDICT-juvenile-stroke: PRospective evaluation of a prediction score determining individual clinical outcome three months after ischemic stroke in young adults - a study protocol.BMC Neurol2023
35292629DIAMetAlyzer allows automated false-discovery rate-controlled analysis for data-independent acquisition in metabolomics.Nat Commun2022
35657592Mass Deconvolution of Top-Down Mass Spectrometry Datasets by FLASHDeconv.Methods Mol Biol2022
35906205FLASHIda enables intelligent data acquisition for top-down proteomics to boost proteoform identification counts.Nat Commun2022
36233463Genome Sequencing and Transcriptome Profiling in Twins Discordant for Mayer-Rokitansky-Küster-Hauser Syndrome.J Clin Med2022
35578825Population Genetics and Signatures of Selection in Early Neolithic European Farmers.Mol Biol Evol2022
35439941De novo identification of maximally deregulated subnetworks based on multi-omics data with DeRegNet.BMC Bioinformatics2022
36266287Cross-linking of the endolysosomal system reveals potential flotillin structures and cargo.Nat Commun2022
35612174The COVID-19 Data Exchange Platform of the German University Medicine.Stud Health Technol Inform2022
35292629DIAMetAlyzer allows automated false-discovery rate-controlled analysis for data-independent acquisition in metabolomics.Nat Commun2022
35219399Exploring protein-protein interactions at the proteome level.Structure2022
35150254Efficient privacy-preserving whole-genome variant queries.Bioinformatics2022
35119864Interpretation of the DOME Recommendations for Machine Learning in Proteomics and Metabolomics.J Proteome Res2022
35141507Understanding the constitutive presentation of MHC class I immunopeptidomes in primary tissues.iScience2022
35612174The COVID-19 Data Exchange Platform of the German University Medicine.Stud Health Technol Inform2022
35439941De novo identification of maximally deregulated subnetworks based on multi-omics data with DeRegNet.BMC Bioinformatics2022
35578825Population Genetics and Signatures of Selection in Early Neolithic European Farmers.Mol Biol Evol2022
35657592Mass Deconvolution of Top-Down Mass Spectrometry Datasets by FLASHDeconv.Methods Mol Biol2022
35906205FLASHIda enables intelligent data acquisition for top-down proteomics to boost proteoform identification counts.Nat Commun2022
36233463Genome Sequencing and Transcriptome Profiling in Twins Discordant for Mayer-Rokitansky-Küster-Hauser Syndrome.J Clin Med2022
36266287Cross-linking of the endolysosomal system reveals potential flotillin structures and cargo.Nat Commun2022
35219399Exploring protein-protein interactions at the proteome level.Structure2022
35150254Efficient privacy-preserving whole-genome variant queries.Bioinformatics2022
35119864Interpretation of the DOME Recommendations for Machine Learning in Proteomics and Metabolomics.J Proteome Res2022
35141507Understanding the constitutive presentation of MHC class I immunopeptidomes in primary tissues.iScience2022
32683440Identifying disease-causing mutations with privacy protection.Bioinformatics2021
33858848HLA Ligand Atlas: a benign reference of HLA-presented peptides to improve T-cell-based cancer immunotherapy.J Immunother Cancer2021
33898938Annotation and initial evaluation of a large annotated German oncological corpus.JAMIA Open2021
34002224Analysis of Genomic DNA from Medieval Plague Victims Suggests Long-Term Effect of Yersinia pestis on Human Immunity Genes.Mol Biol Evol2021
33999836Patient Empowerment During the COVID-19 Pandemic by Ensuring Safe and Fast Communication of Test Results: Implementation and Performance of a Tracking System.J Med Internet Res2021
33520914Reduced Rate of Inpatient Hospital Admissions in 18 German University Hospitals During the COVID-19 Lockdown.Front Public Health2021
34153189DIAproteomics: A Multifunctional Data Analysis Pipeline for Data-Independent Acquisition Proteomics and Peptidomics.J Proteome Res2021
34152993Metadata Correction: Patient Empowerment During the COVID-19 Pandemic by Ensuring Safe and Fast Communication of Test Results: Implementation and Performance of a Tracking System.J Med Internet Res2021
33654096Large-scale discovery of protein interactions at residue resolution using co-evolution calculated from genomic sequences.Nat Commun2021
33711481Data Management of Sensitive Human Proteomics Data: Current Practices, Recommendations, and Perspectives for the Future.Mol Cell Proteomics2021
33495542Genome-wide study of a Neolithic Wartberg grave community reveals distinct HLA variation and hunter-gatherer ancestry.Commun Biol2021
32683440Identifying disease-causing mutations with privacy protection.Bioinformatics2021
32999467SARS-CoV-2-derived peptides define heterologous and COVID-19-induced T cell recognition.Nat Immunol2021
34404458Machine learning identifies ICU outcome predictors in a multicenter COVID-19 cohort.Crit Care2021
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Collaborators

Timo Sachsenberg
Institute for Bioinformatics and Medical Informatics, University of Tubingen
Co-authored papers 26
Knut Reinert
Institut fur Informatik, Freie Universitat Berlin
Co-authored papers 16
Christian G Huber
University of Salzburg
Co-authored papers 13
Juan Antonio Vizca??no
EMBL-European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 10
Henning Urlaub
Max Planck Institute for Multidisciplinary Sciences
Co-authored papers 7
Yasset Perez-Riverol
EMBL's European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 7
Henning Hermjakob
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 7
Lennart Martens
Co-authored papers 6
Hartmut Schl??ter
University Medical Center Hamburg-Eppendorf
Co-authored papers 6
Hans A Kestler
Co-authored papers 5
Julian Uszkoreit
Ruhr University Bochum
Co-authored papers 5
Eric W Deutsch
Institute for Systems Biology
Co-authored papers 5
Andrew R Jones
Institute of Systems, University of Liverpool
Co-authored papers 5
Debora S Marks
Blavatnik Institute, Harvard Medical School
Co-authored papers 4
J??rg Rahnenf??hrer
TU Dortmund University
Co-authored papers 4
Laurent Gatto
de Duve Institute, Universite catholique de Louvain
Co-authored papers 4
Nuno Bandeira
University of California
Co-authored papers 4
Hagit Shatkay
University of Delaware
Co-authored papers 4
Albert J R Heck
Utrecht University
Co-authored papers 3
Andreas Gnirke
The Center for Genome Architecture, Baylor College of Medicine
Co-authored papers 3
Eugen Netz
University of Tubingen, Max Planck Institute for Developmental Biology
Co-authored papers 3
Hongcang Gu
Co-authored papers 3
J??rgen Cox
Max-Planck Institute of Biochemistry
Co-authored papers 3
Alexander Meissner
Co-authored papers 3
Stephan Ossowski
Institute of Medical Genetics and Applied Genomics, University of Tubingen
Co-authored papers 3
Klaus A Kuhn
Institute of Medical Informatics, Technical University of Munich
Co-authored papers 3
Bradley E Bernstein
Broad Institute of MIT and Harvard
Co-authored papers 3
Gunnar R??tsch
ETH Zurich
Co-authored papers 3
Ruedi Aebersold
Institute of Molecular Systems Biology, ETH Zurich
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Steffen Neumann
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