Author details

Full Name

Wing-Kin Sung

Affiliation

ORCID

Career Start Year

2003

Papers

157

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37277343	INSurVeyor: improving insertion calling from short read sequencing data.		2023
37572350	Integrated 3D genome, epigenomeÂ and transcriptome analyses reveal transcriptional coordination of circadian rhythm in rice.		2023
34664666	ASMdb: a comprehensive database for allele-specific DNA methylation in diverse organisms.	Nucleic Acids Research	2022
36109650	Genome assembly and chemogenomic profiling of National Flower of Singapore Papilionanthe Miss Joaquim 'Agnes' reveals metabolic pathways regulating floral traits.	Communications Biology	2022
36223339	Parafibromin governs cell polarity and centrosome assembly in Drosophila neural stem cells.	PLoS Biology	2022
35882980	HFE promotes mitotic cell division through recruitment of cytokinetic abscission machinery in hepatocellular carcinoma.	Oncogene	2022
30989231	SurVIndel: improving CNV calling from high-throughput sequencing data through statistical testing.		2021
33794942	L2MXception: an improved Xception network for classification of peach diseases.	Plant Methods	2021
33565211	Histone lysine methyltransferase Pr-set7/SETD8 promotes neural stem cell reactivation.	EMBO Reports	2021
33453108	HIVID2: an accurate tool to detect virus integrations in the host genome.		2021
33444454	SurVirus: a repeat-aware virus integration caller.	Nucleic Acids Research	2021
34455096	RiceENCODE: A comprehensive epigenomic database as a rice Encyclopedia of DNA Elements.	Molecular Plant	2021
34611310	Single-cell analysis reveals androgen receptor regulates the ER-to-Golgi trafficking pathway with CREB3L2 to drive prostate cancer progression.	Oncogene	2021
34643730	Calling large indels in 1047 Arabidopsis with IndelEnsembler.	Nucleic Acids Research	2021
31482680	A chromosome-level genome assembly reveals the genetic basis of cold tolerance in a notorious rice insect pest, Chilo suppressalis.	Molecular Ecology Resources	2020
33045983	MethHaplo: combining allele-specific DNA methylation and SNPs for haplotype region identification.	BMC Bioinformatics	2020
33023834	HPV-CCDC106 integration alters local chromosome architecture and hijacks an enhancer by three-dimensional genome structure remodeling in cervical cancer.	Journal of Genetics and Genomics	2020
33016928	Multiomic analysis and immunoprofiling reveal distinct subtypes of human angiosarcoma.	J Clin Invest	2020
31409785	Chromatin loops associated with active genes and heterochromatin shape rice genome architecture for transcriptional regulation.	Nature Communications	2019
30606742	An AR-ERG transcriptional signature defined by long-range chromatin interactomes in prostate cancer cells.	Genome Res	2019
30531872	Immune genes are primed for robust transcription by proximal long noncoding RNAs located in nuclear compartments.	Nat Genet	2019
31018143	The Integrator Complex Prevents Dedifferentiation of Intermediate Neural Progenitors back into Neural Stem Cells.	Cell Reports	2019
31429776	Comprehensive analysis of transcriptome profiles in hepatocellular carcinoma.	Journal of Translational Medicine	2019
30669962	An integrated package for bisulfite DNA methylation data analysis with Indel-sensitive mapping.	BMC Bioinformatics	2019
30990336	An Efficient Algorithm for the Rooted Triplet Distance Between Galled Trees.	Journal of Computational Biology	2019
27662679	Algorithms for the Majority Rule (+) Consensus Tree and the Frequency Difference Consensus Tree.	IEEE/ACM Transactions on Computational Biology and Bioinformatics	2018
30137425	TranSurVeyor: an improved database-free algorithm for finding non-reference transpositions in high-throughput sequencing data.	Nucleic Acids Research	2018
29451395	Determining the Consistency of Resolved Triplets and Fan Triplets.	Journal of Computational Biology	2018
28240289	The spatial organization of intra-tumour heterogeneity and evolutionary trajectories of metastases in hepatocellular carcinoma.	Nature Communications	2017
28544881	Mammalian Systems Biotechnology Reveals Global Cellular Adaptations in a Recombinant CHO Cell Line.	Cell Systems	2017
28631187	Serine peptidase inhibitor Kazal type 1 (SPINK1) as novel downstream effector of the cadherin-17/Î²-catenin axis in hepatocellular carcinoma.	Cellular oncology (Dordrecht)	2017
28744001	An intrinsic mechanism controls reactivation of neural stem cells by spindle matrix proteins.	Nature Communications	2017
28361674	BATVI: Fast, sensitive and accurate detection of virus integrations.	BMC Bioinformatics	2017
29089477	Erratum: An intrinsic mechanism controls reactivation of neural stem cells by spindle matrix proteins.	Nature Communications	2017
26658310	Comparison of microarray-predicted closest genomes to sequencing for poliovirus vaccine strain similarity and influenza A phylogeny.	Diagn Microbiol Infect Dis	2016
26845461	Structural variation detection using next-generation sequencing data: A comparative technical review.	Methods	2016
27179955	Pan-omics analysis of biological data.	Methods	2016
26146084	Recurrent Fusion Genes in Gastric Cancer: CLDN18-ARHGAP26 Induces Loss of Epithelial Integrity.	Cell Reports	2015
25762628	TP53 intron 1 hotspot rearrangements are specific to sporadic osteosarcoma and can cause Li-Fraumeni syndrome.	Oncotarget	2015
26357315	An O(m log m)-Time Algorithm for Detecting Superbubbles.	IEEE/ACM Transactions on Computational Biology and Bioinformatics	2015
26348928	Xenopus tropicalis Genome Re-Scaffolding and Re-Annotation Reach the Resolution Required for In Vivo ChIA-PET Analysis.	PLoS One	2015
26170239	BatAlign: an incremental method for accurate alignment of sequencing reads.	Nucleic Acids Research	2015
25080217	Do triplets have enough information to construct the multi-labeled phylogenetic tree?	PLoS ONE	2014
25342237	Differential transcriptomic analyses revealed genes and signaling pathways involved in iono-osmoregulation and cellular remodeling in the gills of euryhaline Mozambique tilapia, Oreochromis mossambicus.	BMC Genomics	2014
26605388	Guest Editorial for the International Conference on Genome Informatics (GIW 2013).	IEEE/ACM Transactions on Computational Biology and Bioinformatics	2014
24462510	Decoding complex patterns of genomic rearrangement in hepatocellular carcinoma.	Genomics	2014
24867943	CWig: compressed representation of Wiggle/BedGraph format.		2014
25188507	Platform comparison for evaluation of ALK protein immunohistochemical expression, genomic copy number and hotspot mutation status in neuroblastomas.	PLoS ONE	2014
24798001	Genomic portrait of resectable hepatocellular carcinomas: implications of RB1 and FGF19 aberrations for patient stratification.	Hepatology	2014
24618901	The Brm-HDAC3-Erm repressor complex suppresses dedifferentiation in Drosophila type II neuroblast lineages.	eLife	2014