Skip to Main Content

Author Details

Iv??n D'Orso
University of Texas Southwestern Medical Center
1998
48
24
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37896896Mathematical Models of HIV-1 Dynamics, Transcription, and Latency.Viruses2023
35232997ADAP1 promotes latent HIV-1 reactivation by selectively tuning KRAS-ERK-AP-1 T cell signaling-transcriptional axis.Nat Commun2022
36460671The PNUTS-PP1 complex acts as an intrinsic barrier to herpesvirus KSHV gene expression and replication.Nat Commun2022
36298843Host Cell Redox Alterations Promote Latent HIV-1 Reactivation through Atypical Transcription Factor Cooperativity.Viruses2022
35250265Decoding Human Genome Regulatory Features That Influence HIV-1 Proviral Expression and Fate Through an Integrated Genomics Approach.Bioinform Biol Insights2022
35281453KAP1/TRIM28: Transcriptional Activator and/or Repressor of Viral and Cellular Programs?Front Cell Infect Microbiol2022
34154414Cleavage and Polyadenylation Specificity Factor 6 Is Required for Efficient HIV-1 Latency Reversal.mBio2021
34270942Nascent RNA: Friend or foe of the chromatin bound?Mol Cell2021
32402252KAP1 Is a Chromatin Reader that Couples Steps of RNA Polymerase II Transcription to Sustain Oncogenic Programs.Mol Cell2020
33288725The ARF tumor suppressor targets PPM1G/PP2Cγ to counteract NF-κB transcription tuning cell survival and the inflammatory response.Proc Natl Acad Sci U S A2020
32443452HIV-1 Proviral Transcription and Latency in the New Era.Viruses2020
30943398Transcriptional Circuit Fragility Influences HIV Proviral Fate.Cell Rep2019
30227759CDK9: a signaling hub for transcriptional control.Transcription2019
29845934The HIV-1 Tat protein recruits a ubiquitin ligase to reorganize the 7SK snRNP for transcriptional activation.Elife2018
28789639CIPHER: a flexible and extensive workflow platform for integrative next-generation sequencing data analysis and genomic regulatory element prediction.BMC Bioinformatics2017
28190026Tandem Affinity Purification of Protein Complexes from Eukaryotic Cells.J Vis Exp2017
26725010KAP1 Recruitment of the 7SK snRNP Complex to Promoters Enables Transcription Elongation by RNA Polymerase II.Mol Cell2016
271286037SKiing on chromatin: Move globally, act locally.RNA Biol2016
27152730Transcription elongation control by the 7SK snRNP complex: Releasing the pause.Cell Cycle2016
27088130Functional interplay between PPM1G and the transcription elongation machinery.RNA Dis2016
26981421Genome-wide analysis of KAP1, the 7SK snRNP complex, and RNA polymerase II.Genom Data2016
26096620Association of UBP1 to ribonucleoprotein complexes is regulated by interaction with the trypanosome ortholog of the human multifunctional P32 protein.Mol Microbiol2015
26488441HIV Tat controls RNA Polymerase II and the epigenetic landscape to transcriptionally reprogram target immune cells.Elife2015
26324325PPM1G Binds 7SK RNA and Hexim1 To Block P-TEFb Assembly into the 7SK snRNP and Sustain Transcription Elongation.Mol Cell Biol2015
24316072Transcription factors mediate the enzymatic disassembly of promoter-bound 7SK snRNP to locally recruit P-TEFb for transcription elongation.Cell Rep2013
24802892Mechanisms of eukaryotic transcription: a meeting report August 27â¿¿31, 2013, CSHL, Cold Spring Harbor, New York.Transcription2013
22414755Transcription control by long non-coding RNAs.Transcription2012
23007159Transition step during assembly of HIV Tat:P-TEFb transcription complexes and transfer to TAR RNA.Mol Cell Biol2012
20708689Purification and characterization of HIV-human protein complexes.Methods2011
22190034Global landscape of HIV-human protein complexes.Nature2011
20562857RNA-mediated displacement of an inhibitory snRNP complex activates transcription elongation.Nat Struct Mol Biol2010
21709748HIV-1 Tat: Its Dependence on Host Factors is Crystal Clear.Viruses2010
19223581Tat acetylation modulates assembly of a viral-host RNA-protein transcription complex.Proc Natl Acad Sci U S A2009
19478882Host cell factors in HIV replication: meta-analysis of genome-wide studies.PLoS Pathog2009
18667497Targeting tat inhibitors in the assembly of human immunodeficiency virus type 1 transcription complexes.J Virol2008
18922466A solution to limited genomic capacity: using adaptable binding surfaces to assemble the functional HIV Rev oligomer on RNA.Mol Cell2008
17267594mRNA maturation by two-step trans-splicing/polyadenylation processing in trypanosomes.Proc Natl Acad Sci U S A2007
17873084Small trypanosome RNA-binding proteins TbUBP1 and TbUBP2 influence expression of F-box protein mRNAs in bloodstream trypanosomes.Eukaryot Cell2007
15751947NMR structural study of TcUBP1, a single RRM domain protein from Trypanosoma cruzi: contribution of a beta hairpin to RNA binding.Biochemistry2005
15610815Insights into a CRM1-mediated RNA-nuclear export pathway in Trypanosoma cruzi.Mol Biochem Parasitol2005
12637517RNA recognition motif-type RNA-binding proteins in Trypanosoma cruzi form a family involved in the interaction with specific transcripts in vivo.J Biol Chem2003
12930992Solution structure of the C-terminal domain from poly(A)-binding protein in Trypanosoma cruzi: a vegetal PABC domain.Protein Sci2003
12689640RNA-binding proteins and mRNA turnover in trypanosomes.Trends Parasitol2003
12403777TcUBP-1, an mRNA destabilizing factor from trypanosomes, homodimerizes and interacts with novel AU-rich element- and Poly(A)-binding proteins forming a ribonucleoprotein complex.J Biol Chem2002
11435421TcUBP-1, a developmentally regulated U-rich RNA-binding protein involved in selective mRNA destabilization in trypanosomes.J Biol Chem2001
11278796Functionally different AU- and G-rich cis-elements confer developmentally regulated mRNA stability in Trypanosoma cruzi by interaction with specific RNA-binding proteins.J Biol Chem2001
10744707AU-rich elements in the 3'-untranslated region of a new mucin-type gene family of Trypanosoma cruzi confers mRNA instability and modulates translation efficiency.J Biol Chem2000
9556557The Trypanosoma cruzi mucin family is transcribed from hundreds of genes having hypervariable regions.J Biol Chem1998
  • 1 - 48 of 48

Recommended Authors

College of Veterinary Medicine, Washington State University
Career Start Year 2012
Number of shared co-authors 1
Gladstone Center for HIV Cure Research, Gladstone Institute of Virology
Career Start Year 2011
Number of shared co-authors 4
ShanghaiTech University
Career Start Year 2011
Number of shared co-authors 1
Life Sciences Institute, Zhejiang University
Career Start Year 2011
Number of shared co-authors 7
Universite de Toulon, CNRS
Career Start Year 2009
Number of shared co-authors 3
Institute of Informatics, Ludwig-Maximilians-Universitat Munchen
Career Start Year 2005
Number of shared co-authors 2
QIMR Berghofer Medical Research Institute
Career Start Year 2005
Number of shared co-authors 0
National Institute of Molecular Genetics, "Fondazione Romeo ed Enrica Invernizzi"
Career Start Year 2005
Number of shared co-authors 8
University of California
Career Start Year 2004
Number of shared co-authors 1
University of Colorado
Career Start Year 2004
Number of shared co-authors 2
Center for Epigenetics and Metabolism, University of California irvine
Career Start Year 2004
Number of shared co-authors 9
Michigan State University College of Human Medicine
Career Start Year 2004
Number of shared co-authors 6
Universidad de Sevilla
Career Start Year 2003
Number of shared co-authors 1
Erasmus University Medical Center
Career Start Year 1999
Number of shared co-authors 1
Sanford Burnham Prebys Medical Discovery Institute
Career Start Year 1997
Number of shared co-authors 4
UC Berkeley
Career Start Year 1997
Number of shared co-authors 12
University of Colorado
Career Start Year 1996
Number of shared co-authors 2
Institut de recherches cliniques de Montreal
Career Start Year 1996
Number of shared co-authors 1
Universitetsbyen 81, Aarhus University
Career Start Year 1995
Number of shared co-authors 0
University of California at San Francisco
Career Start Year 1994
Number of shared co-authors 4
Gladstone Institute of Virology
Career Start Year 1993
Number of shared co-authors 11
Institute for Genomic Medicine, University of California San Diego
Career Start Year 1990
Number of shared co-authors 2
Panum Institute, University of Copenhagen
Career Start Year 1990
Number of shared co-authors 2
Harvard Medical School
Career Start Year 1988
Number of shared co-authors 2
Yale University
Career Start Year 1985
Number of shared co-authors 0
University of British Columbia
Career Start Year 1984
Number of shared co-authors 1
Buck Institute for Research on Aging
Career Start Year 1983
Number of shared co-authors 10
HHMI/NYU Langone School of Medicine
Career Start Year 1980
Number of shared co-authors 0
University of California at San Francisco
Career Start Year 1978
Number of shared co-authors 7
the Rockefeller University
Career Start Year 1969
Number of shared co-authors 3

Collaborators

University of California san francisco
Co-authored papers 11
The University of Texas Southwestern Medical Center
Co-authored papers 5
University of California San Francisco
Co-authored papers 4
University of Utah
Co-authored papers 4
Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes
Co-authored papers 4
University of California san francisco
Co-authored papers 3
Dana-Farber Cancer Institute
Co-authored papers 3
Institute of Molecular Biosciences, Goethe University Frankfurt
Co-authored papers 2
The Scripps Research Institute
Co-authored papers 2
Conway Institute of Biomedical and Biomolecular Sciences, University College Dublin
Co-authored papers 2
University of California berkeley
Co-authored papers 2
Verily Life Sciences LLC
Co-authored papers 2
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 2
Roche Pharma
Co-authored papers 2
Complete Genomics Inc.
Co-authored papers 2
University of California san francisco
Co-authored papers 1
Denali Therapeutics Inc.
Co-authored papers 1
University of Utah
Co-authored papers 1
Metro South Addiction and Mental Health Service
Co-authored papers 1
Salk Institute for Biological Studies
Co-authored papers 1
University of Texas Southwestern Medical Center
Co-authored papers 1
Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California
Co-authored papers 1
University of Utah School of Medicine
Co-authored papers 1
University of Pennsylvania Perelman School of Medicine
Co-authored papers 1
Gladstone Institutes
Co-authored papers 1
University of California san francisco
Co-authored papers 1
University of California san francisco
Co-authored papers 1
The University of Sydney
Co-authored papers 1
University of California San Francisco
Co-authored papers 1
University of California san francisco
Co-authored papers 1