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Author Details

Vikas Bansal
University of California San Diego
2004
68
31
PMIDPaper TitleJournal TitlePublished Year
36202929Whole-genome sequencing of multiple related individuals with type 2 diabetes reveals an atypical likely pathogenic mutation in the PAX6 gene.Eur J Hum Genet2023
36950378The Foundational Data Initiative for Parkinson Disease: Enabling efficient translation from genetic maps to mechanism.Cell Genom2023
37387146A multilocus approach for accurate variant calling in low-copy repeats using whole-genome sequencing.Bioinformatics2023
36335497HapCUT2: A Method for Phasing Genomes Using Experimental Sequence Data.Methods Mol Biol2023
35680869Robust and accurate estimation of paralog-specific copy number for duplicated genes using whole-genome sequencing.Nat Commun2022
35710056Mitochondrial and autophagy-lysosomal pathway polygenic risk scores predict Parkinson's disease.Mol Cell Neurosci2022
33941606Erratum: Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information.Genome Res2021
31598718SEAweb: the small RNA Expression Atlas web application.Nucleic Acids Res2020
31751680VarCover: Allele Min-Set Cover Software.J Mol Diagn2020
31919373Realistic in silico generation and augmentation of single-cell RNA-seq data using generative adversarial networks.Nat Commun2020
33035301Sensitive alignment using paralogous sequence variants improves long-read mapping and variant calling in segmental duplications.Nucleic Acids Res2020
32946807A Single-Cell RNA Expression Map of Human Coronavirus Entry Factors.Cell Rep2020
32714119A Single-Cell RNA Expression Map of Human Coronavirus Entry Factors.SSRN2020
32152318Functional hypoxia drives neuroplasticity and neurogenesis via brain erythropoietin.Nat Commun2020
32540955Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information.Genome Res2020
29795411Violent aggression predicted by multiple pre-adult environmental hits.Mol Psychiatry2019
31472161Sequencing Technologies and Analyses: Where Have We Been and Where Are We Going?iScience2019
31604920Longshot enables accurate variant calling in diploid genomes from single-molecule long read sequencing.Nat Commun2019
31510646Integrating read-based and population-based phasing for dense and accurate haplotyping of individual genomes.Bioinformatics2019
31393866Tagger-A Swiss army knife for multiomics to dissect cell type-specific mechanisms of gene expression in mice.PLoS Biol2019
29036419An accurate algorithm for the detection of DNA fragments from dilution pool sequencing experiments.Bioinformatics2018
30082721Genome-wide association study results for educational attainment aid in identifying genetic heterogeneity of schizophrenia.Nat Commun2018
30072689Targeting myelin lipid metabolism as a potential therapeutic strategy in a model of CMT1A neuropathy.Nat Commun2018
30014265Identification of a missense variant in the WFS1 gene that causes a mild form of Wolfram syndrome and is associated with risk for type 2 diabetes in Ashkenazi Jewish individuals.Diabetologia2018
30271024Takayasu's aorto-arteritis: Not your regular lesion for angioplasty.Ann Pediatr Cardiol2018
30352806Targeted genotyping of variable number tandem repeats with adVNTR.Genome Res2018
29309579DJ-1 is a redox sensitive adapter protein for high molecular weight complexes involved in regulation of catecholamine homeostasis.Hum Mol Genet2018
27940952HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies.Genome Res2017
28361665A computational method for estimating the PCR duplication rate in DNA and RNA-seq experiments.BMC Bioinformatics2017
28442752Zika virus infection reprograms global transcription of host cells to allow sustained infection.Emerg Microbes Infect2017
29207974Spectrum of mutations in monogenic diabetes genes identified from high-throughput DNA sequencing of 6888 individuals.BMC Med2017
29078313Ultraaccurate genome sequencing and haplotyping of single human cells.Proc Natl Acad Sci U S A2017
29242366The landscape of human mutually exclusive splicing.Mol Syst Biol2017
29016861DJ-1 is a redox sensitive adapter protein for high molecular weight complexes involved in regulation of catecholamine homeostasis.Hum Mol Genet2017
28609469Muscle-relevant genes marked by stable H3K4me2/3 profiles and enriched MyoD binding during myogenic differentiation.PLoS One2017
28024639Soluble telmisartan bearing poly (ethylene glycol) conjugated chitosan nanoparticles augmented drug delivery, cytotoxicity, apoptosis and cellular uptake in human cervical cancer cells.Mater Sci Eng C Mater Biol Appl2017
27054394Emergence of nail lacquers as potential transungual delivery system in the management of onchomycosis.Expert Opin Drug Deliv2016
27261577Caffeic acid attenuates oxidative stress, learning and memory deficit in intra-cerebroventricular streptozotocin induced experimental dementia in rats.Biomed Pharmacother2016
27572442Dynamics of the human and viral m(6)A RNA methylomes during HIV-1 infection of T cells.Nat Microbiol2016
27578802A statistical method for the detection of variants from next-generation resequencing of DNA pools.Bioinformatics2016
27105843InPhaDel: integrative shotgun and proximity-ligation sequencing to phase deletions with single nucleotide polymorphisms.Nucleic Acids Res2016
25592880Fast individual ancestry inference from DNA sequence data leveraging allele frequencies for multiple populations.BMC Bioinformatics2015
23999524Evidence for the role of EPHX2 gene variants in anorexia nervosa.Mol Psychiatry2014
24732397Bleomycin sulphate loaded nanostructured lipid particles augment oral bioavailability, cytotoxicity and apoptosis in cervical cancer cells.Colloids Surf B Biointerfaces2014
24400131Outlier-based identification of copy number variations using targeted resequencing in a small cohort of patients with Tetralogy of Fallot.PLoS One2014
24185094Whole-genome haplotype reconstruction using proximity-ligation and shotgun sequencing.Nat Biotechnol2013
23125845Clinical implications of human population differences in genome-wide rates of functional genotypes.Front Genet2012
23009684Genetic structure of community acquired methicillin-resistant Staphylococcus aureus USA300.BMC Genomics2012
21221098The next phase in human genetics.Nat Biotechnol2011
21653520A probabilistic method for the detection and genotyping of small indels from population-scale sequence data.Bioinformatics2011
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Collaborators

Vineet Bafna
University of California San Diego
Co-authored papers 15
Nicholas J Schork
University of California San Diego
Co-authored papers 11
Eric J Topol
Universidade Federal de Sao Paulo
Co-authored papers 9
Ryan Tewhey
University of Maine
Co-authored papers 7
Ondrej Libiger
The Qualcomm Institute, University of California
Co-authored papers 7
Ali Torkamani
Scripps Science Institute
Co-authored papers 6
Ali Bashir
Google Accelerated Science Team, Google Inc
Co-authored papers 3
Olivier Harismendy
University of California
Co-authored papers 3
Kelly A Frazer
University of California, USA Institute for Genomic Medicine
Co-authored papers 3
Bernhard O Boehm
Co-authored papers 3
Phillip Pham
Duke University
Co-authored papers 2
Gregory Humphrey
University of California
Co-authored papers 2
Aaron L Halpern
Illumina Inc.
Co-authored papers 2
C??dric Feschotte
Cornell University
Co-authored papers 2
Sarah S Murray
University of California San Diego Health System
Co-authored papers 2
Ashley A Scott-Van Zeeland
1] The Scripps Translational Science Institute
Co-authored papers 2
Justin P Shaffer
University of California San Diego
Co-authored papers 2
Tariq M Rana
Institute for Genomic Medicine, University of California San Diego
Co-authored papers 2
Marina Mitjans
Max Planck Institute of Experimental Medicine
Co-authored papers 2
Siddarth Selvaraj
Co-authored papers 2
Pavel A Pevzner
University of California
Co-authored papers 2
Samuel Levy
Bluestar Genomics Inc.
Co-authored papers 2
Pedro Belda-Ferre
University of California San Diego
Co-authored papers 2
Tierney Phillips
Bluestar Genomics Inc.
Co-authored papers 2
Nikki Villarasa
Scripps Translational Science Institute and Scripps Health
Co-authored papers 2
Guangfa Zhang
Sichuan Agricultural University
Co-authored papers 2
Allan S Kaplan
Institute of Medical Science, University of Toronto
Co-authored papers 1
Burcu F Darst
Fred Hutchinson Cancer Center
Co-authored papers 1
Janet Treasure
Institute of Psychiatry, King's College London
Co-authored papers 1
Sven Heinz
U.C. San Diego School of Medicine
Co-authored papers 1
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