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Author Details

Allison L Creason
Oregon Health and Science University
2010
20
13
PMIDPaper TitleJournal TitlePublished Year
37547011Addressing persistent challenges in digital image analysis of cancerous tissues.bioRxiv2023
34824477MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging.Nat Methods2022
35243422An omic and multidimensional spatial atlas from serial biopsies of an evolving metastatic breast cancer.Cell Rep Med2022
34146471A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery.Cell Syst2021
33772089Characterizing advanced breast cancer heterogeneity and treatment resistance through serial biopsies and comprehensive analytics.NPJ Precis Oncol2021
34667258Multiomics analysis of serial PARP inhibitor treated metastatic TNBC inform on rational combination therapies.NPJ Precis Oncol2021
34518313Phase Ib Dose Expansion and Translational Analyses of Olaparib in Combination with Capivasertib in Recurrent Endometrial, Triple-Negative Breast, and Ovarian Cancer.Clin Cancer Res2021
34061826Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine.PLoS Comput Biol2021
32523572Phytopathogenic <i>Rhodococcus</i> Have Diverse Plasmids With Few Conserved Virulence Functions.Front Microbiol2020
31506093Reproducible biomedical benchmarking in the cloud: lessons from crowd-sourced data challenges.Genome Biol2019
29533183Correction: Evolutionary transitions between beneficial and phytopathogenic Rhodococcus challenge disease management.Elife2018
29754767Preconception Carrier Screening by Genome Sequencing: Results from the Clinical Laboratory.Am J Hum Genet2018
29231813Evolutionary transitions between beneficial and phytopathogenic <i>Rhodococcus</i> challenge disease management.Elife2017
26959838Genome Sequencing and Transposon Mutagenesis of Burkholderia seminalis TC3.4.2R3 Identify Genes Contributing to Suppression of Orchid Necrosis Caused by B. gladioli.Mol Plant Microbe Interact2016
27217495The Pseudomonas syringae Type III Effector HopG1 Induces Actin Remodeling to Promote Symptom Development and Susceptibility during Infection.Plant Physiol2016
24906130The ABCs and 123s of bacterial secretion systems in plant pathogenesis.Annu Rev Phytopathol2014
25237311Use of whole genome sequences to develop a molecular phylogenetic framework for Rhodococcus fascians and the Rhodococcus genus.Front Plant Sci2014
25010934Analysis of genome sequences from plant pathogenic Rhodococcus reveals genetic novelties in virulence loci.PLoS One2014
23468637Mutualistic co-evolution of type III effector genes in Sinorhizobium fredii and Bradyrhizobium japonicum.PLoS Pathog2013
20920191An improved, high-quality draft genome sequence of the Germination-Arrest Factor-producing Pseudomonas fluorescens WH6.BMC Genomics2010
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Collaborators

Jeremy Goecks
Oregon Health & Science University
Co-authored papers 4
Aurora S Blucher
Knight Cancer Institute, Oregon Health Sciences University
Co-authored papers 3
Joe W Gray
Oregon Health and Science University
Co-authored papers 3
Gordon B Mills
Knight Cancer Institute, Oregon Health and Sciences University
Co-authored papers 3
Jamie M Keck
Knight Cancer Institute, Oregon Health & Science University
Co-authored papers 3
Gustavo Stolovitzky
IBM T.J. Watson Research Center
Co-authored papers 2
Artem Sokolov
Harvard Medical School
Co-authored papers 2
Justin Guinney
University of Washington
Co-authored papers 2
Kyle Ellrott
Oregon Health & Science University
Co-authored papers 2
Paul T Spellman
Department of Molecular and Medical Genetics Oregon Health & Science University
Co-authored papers 2
Paul C Boutros
University of California los angeles
Co-authored papers 2
Damir Sudar
Co-authored papers 2
Joshua M Stuart
University of California at Santa Cruz
Co-authored papers 2
Thomas Yu
Co-authored papers 2
Jeremy L Muhlich
Co-authored papers 2
Christopher L Corless
Oregon Health & Science University
Co-authored papers 2
Laura M Heiser
Oregon Health Sciences University
Co-authored papers 2
Clarence Yapp
Co-authored papers 2
Alex Buchanan
Oregon Health and Science University
Co-authored papers 2
Michael Mason
Co-authored papers 1
Brian J Haas
Broad Institute of MIT and Harvard
Co-authored papers 1
Gail P Jarvik
University of Washington Medical Center
Co-authored papers 1
Cristian Caloian
Ontario Institute for Cancer Research
Co-authored papers 1
James Eddy
Co-authored papers 1
Kami E Chiotti
Oregon Health & Science University
Co-authored papers 1
Mehmet Eren Ahsen
Gies College of Business, University of Illinois at Urbana-Champaign.
Co-authored papers 1
Deborah A Nickerson
University of Washington
Co-authored papers 1
Sebastian Uhrig
National Center for Tumor Diseases (NCT), German Cancer Research Center (DKFZ)
Co-authored papers 1
Nathan Heath Patterson
Co-authored papers 1
Thea Norman
Bill & Melinda Gates Foundation
Co-authored papers 1
Release 1.2