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Author Details

Takeya Kasukawa
RIKEN Center for Integrative Medical Sciences
2001
84
41
PMIDPaper TitleJournal TitlePublished Year
37817005OVCH1 Antisense RNA 1 is differentially expressed between non-frail and frail old adults.Geroscience2024
37817005OVCH1 Antisense RNA 1 is differentially expressed between non-frail and frail old adults.Geroscience2024
36853658Computational approach to evaluate scRNA-seq data quality and gene body coverage with SkewC.STAR Protoc2023
37263619Single-Cell RNA-Seq Reveals LRRC75A-Expressing Cell Population Involved in VEGF Secretion of Multipotent Mesenchymal Stromal/Stem Cells Under Ischemia.Stem Cells Transl Med2023
36853658Computational approach to evaluate scRNA-seq data quality and gene body coverage with SkewC.STAR Protoc2023
37263619Single-Cell RNA-Seq Reveals LRRC75A-Expressing Cell Population Involved in VEGF Secretion of Multipotent Mesenchymal Stromal/Stem Cells Under Ischemia.Stem Cells Transl Med2023
35142952Prediction of transcription factors associated with DNA demethylation during human cellular development.Chromosome Res2022
35886762Systematic Functional Annotation Workflow for Insects.Insects2022
35927293Author Correction: IκBα is required for full transcriptional induction of some NFκB-regulated genes in response to TNF in MCF-7 cells.NPJ Syst Biol Appl2022
36577377Antisense-oligonucleotide-mediated perturbation of long non-coding RNA reveals functional features in stem cells and across cell types.Cell Rep2022
35146392SkewC: Identifying cells with skewed gene body coverage in single-cell RNA sequencing data.iScience2022
35142952Prediction of transcription factors associated with DNA demethylation during human cellular development.Chromosome Res2022
36577377Antisense-oligonucleotide-mediated perturbation of long non-coding RNA reveals functional features in stem cells and across cell types.Cell Rep2022
35927293Author Correction: IκBα is required for full transcriptional induction of some NFκB-regulated genes in response to TNF in MCF-7 cells.NPJ Syst Biol Appl2022
35886762Systematic Functional Annotation Workflow for Insects.Insects2022
35146392SkewC: Identifying cells with skewed gene body coverage in single-cell RNA sequencing data.iScience2022
33211864FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs.Nucleic Acids Res2021
34078885Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.Nat Commun2021
34011993Author Correction: RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions.Nat Commun2021
33891873Automatic identification of small molecules that promote cell conversion and reprogramming.Stem Cell Reports2021
33211864FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs.Nucleic Acids Res2021
34521352The choice of negative control antisense oligonucleotides dramatically impacts downstream analysis depending on the cellular background.BMC Genom Data2021
34853340IκBα is required for full transcriptional induction of some NFκB-regulated genes in response to TNF in MCF-7 cells.NPJ Syst Biol Appl2021
33891873Automatic identification of small molecules that promote cell conversion and reprogramming.Stem Cell Reports2021
34853340IκBα is required for full transcriptional induction of some NFκB-regulated genes in response to TNF in MCF-7 cells.NPJ Syst Biol Appl2021
34521352The choice of negative control antisense oligonucleotides dramatically impacts downstream analysis depending on the cellular background.BMC Genom Data2021
34078885Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.Nat Commun2021
34011993Author Correction: RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions.Nat Commun2021
32492432The Number of Transcription Factors at an Enhancer Determines Switch-like Gene Expression.Cell Rep2020
32079618Recounting the FANTOM CAGE-Associated Transcriptome.Genome Res2020
32014865Mesenchymal-epithelial transition regulates initiation of pluripotency exit before gastrulation.Development2020
32094342RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions.Nat Commun2020
32492432The Number of Transcription Factors at an Enhancer Determines Switch-like Gene Expression.Cell Rep2020
32718981Comparative transcriptomics of primary cells in vertebrates.Genome Res2020
32079618Recounting the FANTOM CAGE-Associated Transcriptome.Genome Res2020
32014865Mesenchymal-epithelial transition regulates initiation of pluripotency exit before gastrulation.Development2020
32094342RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions.Nat Commun2020
32718981Comparative transcriptomics of primary cells in vertebrates.Genome Res2020
30407557Update of the FANTOM web resource: expansion to provide additional transcriptome atlases.Nucleic Acids Res2019
30407557Update of the FANTOM web resource: expansion to provide additional transcriptome atlases.Nucleic Acids Res2019
31075273refTSS: A Reference Data Set for Human and Mouse Transcription Start Sites.J Mol Biol2019
30664627C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution.Nat Commun2019
31075273refTSS: A Reference Data Set for Human and Mouse Transcription Start Sites.J Mol Biol2019
30664627C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution.Nat Commun2019
29045713SCPortalen: human and mouse single-cell centric database.Nucleic Acids Res2018
29045713SCPortalen: human and mouse single-cell centric database.Nucleic Acids Res2018
30157420Muscarinic Acetylcholine Receptors Chrm1 and Chrm3 Are Essential for REM Sleep.Cell Rep2018
30538238Author Correction: Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system.Sci Data2018
30157420Muscarinic Acetylcholine Receptors Chrm1 and Chrm3 Are Essential for REM Sleep.Cell Rep2018
30538238Author Correction: Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system.Sci Data2018
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Collaborators

Yoshihide Hayashizaki
Center for Integrative Medical Sciences
Co-authored papers 42
Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 39
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Co-authored papers 29
Imad Abugessaisa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 25
Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
Co-authored papers 20
Akira Hasegawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 20
Harukazu Suzuki
RIKEN Center for Integrative Medical Sciences
Co-authored papers 19
Masayoshi Itoh
RIKEN Center for Integrative Medical Sciences
Co-authored papers 19
Marina Lizio
Cerevance Ltd
Co-authored papers 17
Jun Kawai
RIKEN Center for Integrative Medical Sciences
Co-authored papers 17
Jessica Severin
Center for Integrative Medical Sciences
Co-authored papers 17
Yasushi Okazaki
Intractable Disease Research Center, Graduate School of Medicine, Juntendo University
Co-authored papers 15
Hidemasa Bono
Hiroshima University
Co-authored papers 15
Dave S B Hoon
Saint John's Cancer Institute at Saint John's Health Center
Co-authored papers 14
Hiroki R Ueda
Co-authored papers 14
Masaaki Furuno
RIKEN Center for Integrative Medical Sciences
Co-authored papers 13
Timo Lassmann
Telethon Kids Institute, University of Western Australia
Co-authored papers 13
Jayson Harshbarger
RIKEN Center for Integrative Medical Sciences
Co-authored papers 13
David A Hume
Mater Research Institute-UQ, Translational Research Institute
Co-authored papers 13
Shuhei Noguchi
RIKEN Center for Integrative Medical Sciences
Co-authored papers 13
Christine A Wells
The University of Melbourne
Co-authored papers 11
Shiro Fukuda
Graduate School of Medicine, Osaka University
Co-authored papers 11
Erik Arner
RIKEN Center for Integrative Medical Sciences (IMS)
Co-authored papers 11
Shintaro Katayama
Folkhalsan Research Center
Co-authored papers 11
Jay W Shin
Genome Institute of Singapore (GIS)
Co-authored papers 10
Carsten O Daub
International Institute of Molecular and Cell Biology in Warsaw
Co-authored papers 9
Takahiro Arakawa
Tokyo University of Technology
Co-authored papers 9
Chung-Chau Hon
RIKEN center for Integrative Medical Sciences, Hiroshima University
Co-authored papers 9
Boris Lenhard
MRC London Institute of Medical Sciences
Co-authored papers 9
Albin Sandelin
University of Copenhagen
Co-authored papers 9
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