Author details

Full Name

Pedro Madrigal

Affiliation

ORCID

Career Start Year

2011

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37059720	Mannose metabolism inhibition sensitizes acute myeloid leukaemia cells to therapy by driving ferroptotic cell death.	Nat Commun	2023
36945543	Matrix and analysis metadata standards (MAMS) to facilitate harmonization and reproducibility of single-cell data.	bioRxiv	2023
36697417	Epigenetic and transcriptional regulations prime cell fate before division during human pluripotent stem cell differentiation.		2023
36452864	Challenges and considerations for single-cell and spatially resolved transcriptomics sample collection during spaceflight.	Cell Rep Methods	2022
35999570	Machine learning algorithm to characterize antimicrobial resistance associated with the International Space Station surface microbiome.	Microbiome	2022
36544819	The Maleth program: Malta's first space mission discoveries on the microbiome of diabetic foot ulcers.		2022
34556857	Mutational synergy during leukemia induction remodels chromatin accessibility, histone modifications and three-dimensional DNA topology to alter gene expression.	Nat Genet	2021
34450036	Modeling HNF1B-associated monogenic diabetes using human iPSCs reveals an early stage impairment of the pancreatic developmental program.	Stem Cell Reports	2021
33242401	Revamping Space-omics in Europe.	Cell Syst	2020
32041960	Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression.	Nat Commun	2020
32492426	Functional Divergence of the Arabidopsis Florigen-Interacting bZIP Transcription Factors FD and FDP.	Cell Reports	2020
32697995	Functional Divergence of the Arabidopsis Florigen-Interacting bZIP Transcription Factors FD and FDP.	Cell Reports	2020
30668667	Functional data analysis for computational biology.		2019
30629940	GATA6 Cooperates with EOMES/SMAD2/3 to Deploy the Gene Regulatory Network Governing Human Definitive Endoderm and Pancreas Formation.	Stem Cell Reports	2019
29778529	AP-1 Takes Centre Stage in Enhancer Chromatin Dynamics.	Trends in Cell Biology	2018
29879455	hiPSC hepatocyte model demonstrates the role of unfolded protein response and inflammatory networks in Î±<sub>1</sub>-antitrypsin deficiency.	J Hepatol	2018
29489750	The SMAD2/3 interactome reveals that TGFÎ² controls mA mRNA methylation in pluripotency.	Nature	2018
27993776	fCCAC: functional canonical correlation analysis to evaluate covariance between nucleic acid sequencing datasets.		2017
28671689	Reconstruction of the mouse extrahepatic biliary tree using primary human extrahepatic cholangiocyte organoids.	Nature Medicine	2017
29203652	Divergence of regulatory networks governed by the orthologous transcription factors FLC and PEP1 in Brassicaceae species.	Proceedings of the National Academy of Sciences of the United States of America	2017
27565134	Erratum to: A survey of best practices for RNA-seq data analysis.	Genome Biol	2016
26883361	Initiation of stem cell differentiation involves cell cycle-dependent regulation of developmental genes by Cyclin D.	Genes and Development	2016
26813401	A survey of best practices for RNA-seq data analysis.	Genome Biol	2016
26167629	Cholangiocytes derived from human induced pluripotent stem cells for disease modeling and drug validation.	Nature Biotechnology	2015
25853185	Combinatorial activities of SHORT VEGETATIVE PHASE and FLOWERING LOCUS C define distinct modes of flowering regulation in Arabidopsis.		2015
25805847	Activin/nodal signaling and NANOG orchestrate human embryonic stem cell fate decisions by controlling the H3K4me3 chromatin mark.	Genes Dev	2015
26442258	On Accounting for Sequence-Specific Bias in Genome-Wide Chromatin Accessibility Experiments: Recent Advances and Contradictions.	Frontiers in Bioengineering and Biotechnology	2015
26140054	Uncovering correlated variability in epigenomic datasets using the Karhunen-Loeve transform.	BioData Mining	2015
24581456	Dynamics of chromatin accessibility and gene regulation by MADS-domain transcription factors in flower development.		2014
24244136	Practical guidelines for the comprehensive analysis of ChIP-seq data.	PLoS Comput Biol	2013
23118738	Current bioinformatic approaches to identify DNase I hypersensitive sites and genomic footprints from DNase-seq data.	Frontiers in Genetics	2012
26069394	Flowering and Plant Development at the 38th Spanish Society of Genetics Congress, Murcia, 2011.	Journal of Plant Growth Regulation	2012
22125481	PLoS Computational Biology Conference Postcards from ISMB/ECCB 2011.	PLoS Computational Biology	2011