Author details

Full Name

Yanjun Qi

Affiliation

University of Virginiagrid.27755.32

ORCID

Career Start Year

2005

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
35076276	Correction for Rando et al., "Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure".	mSystems	2022
33381816	Graph convolutional networks for epigenetic state prediction using both sequence and 3D genome data.	Bioinformatics	2020
33381828	FastSK: fast sequence analysis with gapped string kernels.	Bioinformatics	2020
27654939	Transfer String Kernel for Cross-Context DNA-Protein Binding Prediction.	IEEE/ACM Trans Comput Biol Bioinform	2019
29618526	Opportunities and obstacles for deep learning in biology and medicine.	J R Soc Interface	2018
30423076	DeepDiff: DEEP-learning for predicting DIFFerential gene expression from histone modifications.	Bioinformatics	2018
27896980	DEEP MOTIF DASHBOARD: VISUALIZING AND UNDERSTANDING GENOMIC SEQUENCES USING DEEP NEURAL NETWORKS.	Pac Symp Biocomput	2017
30147283	Attend and Predict: Understanding Gene Regulation by Selective Attention on Chromatin.	Adv Neural Inf Process Syst	2017
26837576	Recurrent chimeric fusion RNAs in non-cancer tissues and cells.	Nucleic Acids Res	2016
27587684	DeepChrome: deep-learning for predicting gene expression from histone modifications.	Bioinformatics	2016
25592592	Refining literature curated protein interactions using expert opinions.	Pac Symp Biocomput	2015
26032770	Cas9-chromatin binding information enables more accurate CRISPR off-target prediction.	Nucleic Acids Res	2015
24297536	An integrated approach to blood-based cancer diagnosis and biomarker discovery.	Pac Symp Biocomput	2014
25152296	[Changes of proliferation and angiogenesis of residual tumor in rabbit lung after radiofrequency ablation].	Zhonghua Yi Xue Za Zhi	2014
24345485	[Change of ERCC1 expression of residual VX2 squamous carcinoma cells in rabbit lung after radiofrequency ablation].	Zhongguo Fei Ai Za Zhi	2013
22174286	Determining confidence of predicted interactions between HIV-1 and human proteins using conformal method.	Pac Symp Biocomput	2012
22461885	A unified multitask architecture for predicting local protein properties.	PLoS One	2012
20823334	Semi-supervised multi-task learning for predicting interactions between HIV-1 and human proteins.	Bioinformatics	2010
19209727	Prediction of interactions between HIV-1 and human proteins by information integration.	Pac Symp Biocomput	2009
19798668	Systematic prediction of human membrane receptor interactions.	Proteomics	2009
18613946	A critical assessment of Mus musculus gene function prediction using integrated genomic evidence.	Genome Biol	2008
18586722	Protein complex identification by supervised graph local clustering.	Bioinformatics	2008
18594017	Combined inhibition of PLC{gamma}-1 and c-Src abrogates epidermal growth factor receptor-mediated head and neck squamous cell carcinoma invasion.	Clin Cancer Res	2008
18269700	A mixture of feature experts approach for protein-protein interaction prediction.	BMC Bioinformatics	2007
16450363	Evaluation of different biological data and computational classification methods for use in protein interaction prediction.	Proteins	2006
15759657	Random forest similarity for protein-protein interaction prediction from multiple sources.	Pac Symp Biocomput	2005

1 - 26 of 26

Jie Hou

Saint Louis University

Career Start Year 2015

Number of shared co-authors 3

Marinka Zitnik

Harvard Medical School

Career Start Year 2013

Number of shared co-authors 1

Haitham Ashoor

Computational Bioscience Research Center (CBRC)

Career Start Year 2013

Number of shared co-authors 0

Jianzhu Ma

Purdue University

Career Start Year 2012

Number of shared co-authors 1

Zheng Wang

University of Miami

Career Start Year 2009

Number of shared co-authors 3

Jian Peng

University of Illinois

Career Start Year 2009

Number of shared co-authors 2

Sheng Wang

University of Texas at Arlington

Career Start Year 2008

Number of shared co-authors 1

Stefan R Maetschke

Institute for Molecular Bioscience and ARC Centre of Excellence in Bioinformatics

Career Start Year 2007

Number of shared co-authors 0

Xin Gao

King Abdullah University of Science and Technology (KAUST)

Career Start Year 2007

Number of shared co-authors 1

Alberto Paccanaro

University of London

Career Start Year 2005

Number of shared co-authors 5

Wenjin Jim Zheng

University of Texas Health Science Center at Houston

Career Start Year 2004

Number of shared co-authors 0

Dongsup Kim

Korea Advanced Institute of Science and Technology

Career Start Year 2003

Number of shared co-authors 2

Zhaohui S Qin

Emory University

Career Start Year 2002

Number of shared co-authors 0

Daphne Koller

Stanford University

Career Start Year 2001

Number of shared co-authors 2

Haiyuan Yu

Weill Institute for Cell and Molecular Biology, Cornell University

Career Start Year 2001

Number of shared co-authors 3

Roded Sharan

Tel Aviv University

Career Start Year 2000

Number of shared co-authors 0

Gary D Bader

University of Toronto

Career Start Year 2000

Number of shared co-authors 7

Wei Wang

IBM Thomas J Watson Research Center, University of California Los Angeles, University of North Carolina at Chapel Hill

Career Start Year 1999

Number of shared co-authors 0

Asa Ben-Hur

Colorado State University

Career Start Year 1996

Number of shared co-authors 3

Panayiotis V Benos

University of Florida

Career Start Year 1996

Number of shared co-authors 2

Ron Shamir

Tel Aviv University

Career Start Year 1995

Number of shared co-authors 0

Hiroshi Mamitsuka

Institute for Chemical Research, Kyoto University

Career Start Year 1994

Number of shared co-authors 2

Bonnie Berger

Massachusetts Institute of Technology

Career Start Year 1994

Number of shared co-authors 3

Byoung-Tak Zhang

Seoul National University

Career Start Year 1994

Number of shared co-authors 0

Simon Kasif

Boston University

Career Start Year 1993

Number of shared co-authors 1

Zhiping Weng

University of Massachusetts Medical School

Career Start Year 1992

Number of shared co-authors 4

Tommi S Jaakkola

Massachusetts Institute of Technology

Career Start Year 1992

Number of shared co-authors 1

Mark Gerstein

Yale University

Career Start Year 1991

Number of shared co-authors 5

Wing Hung Wong

Stanford University

Career Start Year 1991

Number of shared co-authors 1

Aidong Zhang (CM4AI)

University of Virginia

Career Start Year 1987

Number of shared co-authors 0

row(s) 1 - 30 of 30

Judith Klein-Seetharaman

School of Molecular Sciences & College of Health Solutions, Arizona State University

Co-authored papers 11

Jack Lanchantin

University of Virginia

Co-authored papers 7

Ziv Bar-Joseph

Carnegie Mellon University

Co-authored papers 6

Simina M Boca

Georgetown University Medical Center

Co-authored papers 2

Casey S Greene

Dartmouth College Geisel School of Medicine, Princeton University, University of Colorado Anschutz Medical Campus, University of Pennsylvania Perelman School of Medicine

Co-authored papers 2

Casey S Greene

Co-authored papers 2

William Stafford Noble

Co-authored papers 2

Jennifer R Grandis

University of California san francisco

Co-authored papers 2

Gail L Rosen

Drexel University

Co-authored papers 1

Gregory P Way