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Author Details

Chandrasekaran Ramakrishnan
Indian Institute of Technology Madras
1962
88
25
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36833460Understanding Drug Resistance of Wild-Type and L38HL Insertion Mutant of HIV-1 C Protease to Saquinavir.Genes (Basel)2023
31900102Molecular dynamics simulations of cognate and non-cognate AspRS-tRNA<sup>Asp</sup> complexes.J Biomol Struct Dyn2021
30806580Identification of novel NAD(P)H dehydrogenase [quinone] 1 antagonist using computational approaches.J Biomol Struct Dyn2020
32057853Role of disordered regions in transferring tyrosine to its cognate tRNA.Int J Biol Macromol2020
32552652Identification of Potential Inhibitors for Targets Involved in Dengue Fever.Curr Top Med Chem2020
30861186Plant latex thrombin-like cysteine proteases alleviates bleeding by bypassing factor VIII in murine model.J Cell Biochem2019
31863054A prospective compound screening contest identified broader inhibitors for Sirtuin 1.Sci Rep2019
31607615Stereochemical Assessment of (Ï¿,Ï¿) Outliers in Protein Structures Using Bond Geometry-Specific Ramachandran Steric-Maps.Structure2019
28589758Identification of type I and type II inhibitors of c-Yes kinase using in silico and experimental techniques.J Biomol Struct Dyn2018
30139745The non-enzymatic RAS effector RASSF7 inhibits oncogenic c-Myc function.J Biol Chem2018
27404945Intramolecular backbone···backbone hydrogen bonds in polypeptide conformations. The other way around: ɿ-turn.Biopolymers2017
28931921An iterative compound screening contest method for identifying target protein inhibitors using the tyrosine-protein kinase Yes.Sci Rep2017
28054451Structure-function relationship of Chikungunya nsP2 protease: A comparative study with papain.Chem Biol Drug Des2017
27060751Dimethyl ester of bilirubin exhibits anti-inflammatory activity through inhibition of secretory phospholipase A2, lipoxygenase and cyclooxygenase.Arch Biochem Biophys2016
27597642Celastrol modulates inflammation through inhibition of the catalytic activity of mediators of arachidonic acid pathway: Secretory phospholipase A<sub>2</sub> group IIA, 5-lipoxygenase and cyclooxygenase-2.Pharmacol Res2016
25447774Inhibitory potential of three zinc chelating agents against the proteolytic, hemorrhagic, and myotoxic activities of Echis carinatus venom.Toxicon2015
26274501Progressive Hemorrhage and Myotoxicity Induced by Echis carinatus Venom in Murine Model: Neutralization by Inhibitor Cocktail of N,N,N',N'-Tetrakis (2-Pyridylmethyl) Ethane-1,2-Diamine and Silymarin.PLoS One2015
26243713Peptide δ-Turn: Literature Survey and Recent Progress.Chemistry2015
26607293Identification of potential inhibitors based on compound proposal contest: Tyrosine-protein kinase Yes as a target.Sci Rep2015
25886642Structure based approach for understanding organism specific recognition of protein-RNA complexes.Biol Direct2015
25939848Identifying a potential receptor for the antibacterial peptide of sponge Axinella donnani endosymbiont.Gene2015
23934782Sparsely populated residue conformations in protein structures: revisiting "experimental" Ramachandran maps.Proteins2014
24703201Identification of novel inhibitors of Daboia russelli phospholipase A2 using the combined pharmacophore modeling approach.Chem Biol Drug Des2014
24184732Investigations of Ramachandran disallowed conformations in protein domain families.Int J Biol Macromol2014
23157310Molecular dynamics simulations of retinoblastoma protein.J Biomol Struct Dyn2013
22228445Asparagine and glutamine differ in their propensities to form specific side chain-backbone hydrogen bonded motifs in proteins.Proteins2012
21058397Conformational analysis and design of cross-strand disulfides in antiparallel β-sheets.Proteins2011
19938155Disulfide conformation and design at helix N-termini.Proteins2010
20923223Molecular dynamics study of secretory phospholipase A2 of Russell's viper and bovine pancreatic sources.J Phys Chem B2010
19384987Conformational choices for the stereochemically constrained gamma-amino acid residue gabapentin: theoretical studies and correlation with experimental results.Biopolymers2009
19341285Expanding the peptide beta-turn in alphagamma hybrid sequences: 12 atom hydrogen bonded helical and hairpin turns.J Am Chem Soc2009
17034035Thermodynamic effects of proline introduction on protein stability.Proteins2007
17897093Structural compromise of disallowed conformations in peptide and protein structures.Protein Pept Lett2007
18069886Stereochemical criteria for prediction of the effects of proline mutations on protein stability.PLoS Comput Biol2007
17623846Structural assessment of glycyl mutations in invariantly conserved motifs.Proteins2007
17727880Design of disulfide-linked thioredoxin dimers and multimers through analysis of crystal contacts.J Mol Biol2007
15644196Conformational analysis of invariant peptide sequences in bacterial genomes.J Mol Biol2005
16262263Protein stabilization by introduction of cross-strand disulfides.Biochemistry2005
12826724Stranded in isolation: structural role of isolated extended strands in proteins.Protein Eng2003
12702798MODIP revisited: re-evaluation and refinement of an automated procedure for modeling of disulfide bonds in proteins.Protein Eng2003
12643768A novel complexity measure for comparative analysis of protein sequences from complete genomes.J Biomol Struct Dyn2003
12727285Inter-subunit recognition and manifestation of segmental mobility in Escherichia coli RNA polymerase: a case study with omega-beta' interaction.Biophys Chem2003
12468712A conformational analysis of Walker motif A [GXXXXGKT (S)] in nucleotide-binding and other proteins.Protein Eng2002
22896883On the importance of backbone loop and peptide flip in the Walker sequence in F1-ATPase action.Indian J Biochem Biophys2002
12360522Influence of solvent molecules on the stereochemical code of glycyl residues in proteins.Proteins2002
11468366In memoriam: Professor G.N. Ramachandran (1922-2001).Protein Sci2001
10810153Deterministic features of side-chain main-chain hydrogen bonds in globular protein structures.Protein Eng2000
10469825Knowledge-based modeling of the serine protease triad into non-proteases.Protein Eng1999
10413090Prediction of the maximal stability temperature of monomeric globular proteins solely from amino acid sequence.FEBS Lett1999
10388841Secondary structures without backbone: an analysis of backbone mimicry by polar side chains in protein structures.Protein Eng1999
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Collaborators

Raghavan Varadarajan
Indian Institute of Science
Co-authored papers 9
Ramanathan Sowdhamini
Indian Institute of Science
Co-authored papers 7
Narayanan Eswar
University of California at San Francisco
Co-authored papers 5
Yutaka Akiyama
Co-authored papers 4
Mitsuo Iwadate
Co-authored papers 3
Takashi Ishida
Co-authored papers 3
Hideaki Umeyama
Co-authored papers 3
Daisuke Kihara
Purdue University
Co-authored papers 2
Balasubramanian Lakshmi
Bharathidasan University, Indian Institute of Science
Co-authored papers 2
Hiroaki Kitano
Co-authored papers 2
Woong-Hee Shin
Co-authored papers 2
Andrej Sali (CM4AI)
University of California San Francisco
Co-authored papers 1
Masahito Ohue
Co-authored papers 1
Mallur S Madhusudhan
Indian Institute of Science Education and Research Pune
Co-authored papers 1
Purbani Chakrabarti
Babraham Institute
Co-authored papers 1
Kanika Bajaj
Genentech Inc.
Co-authored papers 1
Brian K Shoichet
Department of Pharmaceutical Chemistry, University of California san francisco
Co-authored papers 1
Bharat V Adkar
Harvard University
Co-authored papers 1
Yuko Tsuchiya
Co-authored papers 1
Release 1.2