Author details

Full Name

Sanbo Qin

Affiliation

University of Illinois at Chicago

ORCID

Career Start Year

2004

Papers

H Index

Expertise

CM4AI Collaborator

Andrej Sali (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36227466	Calculating Binodals and Interfacial Tension of Phase-Separated Condensates from Molecular Simulations with Finite-Size Corrections.	Methods Mol Biol	2023
36227466	Calculating Binodals and Interfacial Tension of Phase-Separated Condensates from Molecular Simulations with Finite-Size Corrections.	Methods Mol Biol	2023
37644195	Atomistic modeling of liquid-liquid phase equilibrium explains dependence of critical temperature on Î³-crystallin sequence.	Commun Biol	2023
36778236	Predicting the Sequence-Dependent Backbone Dynamics of Intrinsically Disordered Proteins.	bioRxiv	2023
37162827	Atomistic Modeling of Liquid-Liquid Phase Equilibrium Explains Dependence of Critical Temperature on Î³-Crystallin Sequence.	bioRxiv	2023
37644195	Atomistic modeling of liquid-liquid phase equilibrium explains dependence of critical temperature on Î³-crystallin sequence.	Commun Biol	2023
37162827	Atomistic Modeling of Liquid-Liquid Phase Equilibrium Explains Dependence of Critical Temperature on Î³-Crystallin Sequence.	bioRxiv	2023
36778236	Predicting the Sequence-Dependent Backbone Dynamics of Intrinsically Disordered Proteins.	bioRxiv	2023
35044179	Preferential Interactions of a Crowder Protein with the Specific Binding Site of a Native Protein Complex.	J Phys Chem Lett	2022
36005688	ReSMAP: Web Server for Predicting Residue-Specific Membrane-Association Propensities of Intrinsically Disordered Proteins.	Membranes (Basel)	2022
35044179	Preferential Interactions of a Crowder Protein with the Specific Binding Site of a Native Protein Complex.	J Phys Chem Lett	2022
36005688	ReSMAP: Web Server for Predicting Residue-Specific Membrane-Association Propensities of Intrinsically Disordered Proteins.	Membranes (Basel)	2022
34241191	Characterizing protein kinase A (PKA) subunits as macromolecular regulators of PKA RIÎ± liquid-liquid phase separation.	J Chem Phys	2021
34241191	Characterizing protein kinase A (PKA) subunits as macromolecular regulators of PKA RIÎ± liquid-liquid phase separation.	J Chem Phys	2021
30950267	Both Ligands and Macromolecular Crowders Preferentially Bind to Closed Conformations of Maltose Binding Protein.	Biochemistry	2019
31490691	Calculation of Second Virial Coefficients of Atomistic Proteins Using Fast Fourier Transform.	J Phys Chem B	2019
30950267	Both Ligands and Macromolecular Crowders Preferentially Bind to Closed Conformations of Maltose Binding Protein.	Biochemistry	2019
31192219	Transfer Free Energies of Test Proteins Into Crowded Protein Solutions Have Simple Dependence on Crowder Concentration.	Front Mol Biosci	2019
31490691	Calculation of Second Virial Coefficients of Atomistic Proteins Using Fast Fourier Transform.	J Phys Chem B	2019
31192219	Transfer Free Energies of Test Proteins Into Crowded Protein Solutions Have Simple Dependence on Crowder Concentration.	Front Mol Biosci	2019
29539394	Intrinsically Disordered Protein Exhibits Both Compaction and Expansion under Macromolecular Crowding.	Biophys J	2018
30230839	Atomistic Modeling of Intrinsically Disordered Proteins Under Polyethylene Glycol Crowding: Quantitative Comparison with Experimental Data and Implication of Protein-Crowder Attraction.	J Phys Chem B	2018
29716768	Why Do Disordered and Structured Proteins Behave Differently in Phase Separation?	Trends Biochem Sci	2018
29539394	Intrinsically Disordered Protein Exhibits Both Compaction and Expansion under Macromolecular Crowding.	Biophys J	2018
30230839	Atomistic Modeling of Intrinsically Disordered Proteins Under Polyethylene Glycol Crowding: Quantitative Comparison with Experimental Data and Implication of Protein-Crowder Attraction.	J Phys Chem B	2018
29716768	Why Do Disordered and Structured Proteins Behave Differently in Phase Separation?	Trends Biochem Sci	2018
27771543	Protein folding, binding, and droplet formation in cell-like conditions.	Curr Opin Struct Biol	2017
27771543	Protein folding, binding, and droplet formation in cell-like conditions.	Curr Opin Struct Biol	2017
27327881	Fast Method for Computing Chemical Potentials and Liquid-Liquid Phase Equilibria of Macromolecular Solutions.	J Phys Chem B	2016
27327881	Fast Method for Computing Chemical Potentials and Liquid-Liquid Phase Equilibria of Macromolecular Solutions.	J Phys Chem B	2016
27122118	Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.	Proteins	2016
27122118	Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.	Proteins	2016
24155158	Blind prediction of interfacial water positions in CAPRI.	Proteins	2014
24155158	Blind prediction of interfacial water positions in CAPRI.	Proteins	2014
25061446	Further Development of the FFT-based Method for Atomistic Modeling of Protein Folding and Binding under Crowding: Optimization of Accuracy and Speed.	J Chem Theory Comput	2014
25061446	Further Development of the FFT-based Method for Atomistic Modeling of Protein Folding and Binding under Crowding: Optimization of Accuracy and Speed.	J Chem Theory Comput	2014
23526172	PI<sup>2</sup>PE: A Suite of Web Servers for Predictions Ranging From Protein Structure to Binding Kinetics.	Biophys Rev	2013
23912849	Folding free energy surfaces of three small proteins under crowding: validation of the postprocessing method by direct simulation.	Phys Biol	2013
24312701	Effects of Macromolecular Crowding on the Conformational Ensembles of Disordered Proteins.	J Phys Chem Lett	2013
23843247	Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions.	Proteins	2013
24187527	An FFT-based method for modeling protein folding and binding under crowding: benchmarking on ellipsoidal and all-atom crowders.	J Chem Theory Comput	2013
23873496	Using the concept of transient complex for affinity predictions in CAPRI rounds 20-27 and beyond.	Proteins	2013
23526172	PI<sup>2</sup>PE: A Suite of Web Servers for Predictions Ranging From Protein Structure to Binding Kinetics.	Biophys Rev	2013
23710260	Simulation and Modeling of Crowding Effects on the Thermodynamic and Kinetic Properties of Proteins with Atomic Details.	Biophys Rev	2013
24312701	Effects of Macromolecular Crowding on the Conformational Ensembles of Disordered Proteins.	J Phys Chem Lett	2013
24187527	An FFT-based method for modeling protein folding and binding under crowding: benchmarking on ellipsoidal and all-atom crowders.	J Chem Theory Comput	2013
23912849	Folding free energy surfaces of three small proteins under crowding: validation of the postprocessing method by direct simulation.	Phys Biol	2013
23873496	Using the concept of transient complex for affinity predictions in CAPRI rounds 20-27 and beyond.	Proteins	2013
23843247	Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions.	Proteins	2013
23710260	Simulation and Modeling of Crowding Effects on the Thermodynamic and Kinetic Properties of Proteins with Atomic Details.	Biophys Rev	2013

1 - 50 of 102

Xingcheng Lin

Massachusetts Institute of Technology

Career Start Year 2014

Number of shared co-authors 0

Ignacia Echeverria

University of California san francisco

Career Start Year 2010

Number of shared co-authors 3

Massimiliano Bonomi

Institut Pasteur, Universite Paris Cite, CNRS UMR 8

Career Start Year 2007

Number of shared co-authors 3

Yanxin Liu

University of California san francisco

Career Start Year 2007

Number of shared co-authors 1

Seung Joong Kim

Korea Advanced Institute of Science and Technology (KAIST)

Career Start Year 2006

Number of shared co-authors 3

Abhishek K Jha

Elucidata Corporation

Career Start Year 2005

Number of shared co-authors 1

James C Gumbart

Georgia Institute of Technology

Career Start Year 2005

Number of shared co-authors 1

Riccardo Pellarin

CNRS UMR 5086 and Universite Claude Bernard Lyon 1

Career Start Year 2003

Number of shared co-authors 4

Henry van den Bedem

University of California San Francisco

Career Start Year 2002

Number of shared co-authors 1

Rommie E Amaro

University of California

Career Start Year 2001

Number of shared co-authors 4

Matteo Dal Peraro

Institute of Bioengineering

Career Start Year 2001

Number of shared co-authors 6

David E Shaw

Columbia University

Career Start Year 2000

Number of shared co-authors 3

Matthew P Jacobson

Department of Pharmaceutical Chemistry, University of California san francisco

Career Start Year 1999

Number of shared co-authors 9

Michael Feig

Michigan State University

Career Start Year 1998

Number of shared co-authors 2

Nikolay V Dokholyan

Pennsylvania State University College of Medicine

Career Start Year 1998

Number of shared co-authors 5

Michele Vendruscolo

University of Cambridge

Career Start Year 1996

Number of shared co-authors 3

Ivet Bahar

Laufer Center for Physical and Quantitative Biology, Stony Brook University

Career Start Year 1994

Number of shared co-authors 2

Gerhard Hummer

Max Planck Institute of Biophysics

Career Start Year 1994

Number of shared co-authors 5

Mark A Williams

Harwell Science & Innovation Campus

Career Start Year 1994

Number of shared co-authors 3

Giorgio Colombo

Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico

Career Start Year 1993

Number of shared co-authors 1

Tobin R Sosnick

Institute for Biophysical Dynamics, The University of Chicago

Career Start Year 1990

Number of shared co-authors 5

Michael K Gilson

University of California

Career Start Year 1985

Number of shared co-authors 2

Ariel Fern??ndez

University of Florida

Career Start Year 1984

Number of shared co-authors 0

Ruth Nussinov

Sackler School of Medicine, Tel Aviv University

Career Start Year 1980

Number of shared co-authors 13

Eugene I Shakhnovich

Harvard University

Career Start Year 1980

Number of shared co-authors 1

David A Case

Rutgers University

Career Start Year 1977

Number of shared co-authors 4

Charles L Brooks

University of Michigan ann arbor

Career Start Year 1974

Number of shared co-authors 1

Barry Honig

Columbia University Irving Medical Center

Career Start Year 1971

Number of shared co-authors 6

Michael Levitt

Stanford University

Career Start Year 1969

Number of shared co-authors 12

Martin Karplus

Harvard University

Career Start Year 1959

Number of shared co-authors 4

row(s) 1 - 30 of 30

Huan-Xiang Zhou

University of Illinois Chicago

Co-authored papers 45

Shoshana J Wodak

VIB-VUB Center for Structural Biology

Co-authored papers 4

Paul A Bates

The Francis Crick Institute

Co-authored papers 4

Juan Fern??ndez-Recio

Instituto de Ciencias de la Vid y del Vino (ICVV-CSIC)

Co-authored papers 4

Hasup Lee

Seoul National University

Co-authored papers 4

Jeffrey J Gray

Johns Hopkins University

Co-authored papers 4

Chaok Seok

Seoul National University

Co-authored papers 4

Alexandre M J J Bonvin

Bijvoet Center for Biomolecular Research, Utrecht University

Co-authored papers 4

Sheng-You Huang

Huazhong University of Science and Technology

Co-authored papers 4

Brian G Pierce

University of Maryland Institute for Bioscience and Biotechnology Research

Co-authored papers 4

Thom Vreven

Visterra Inc.

Co-authored papers 4

Xiaoqin Zou

Dalton Cardiovascular Research Center, University of Missouri

Co-authored papers 4

Iain H Moal

GSK Medicines Research Centre

Co-authored papers 4

Zhiping Weng

University of Massachusetts Medical School

Co-authored papers 4

Panagiotis L Kastritis

Interdisciplinary Research Center HALOmem, Martin Luther University Halle-Wittenberg

Co-authored papers 4

Julie C Mitchell

Co-authored papers 3

Yuko Tsuchiya

Co-authored papers 3

Dima Kozakov

Stony Brook University

Co-authored papers 3

Sandor Vajda

Boston University

Co-authored papers 3

Daron M Standley

Osaka university

Co-authored papers 3

Howook Hwang

Co-authored papers 3

Juan Esquivel-Rodr??guez

Costa Rica Institute of Technology

Co-authored papers 3

Haruki Nakamura

Institute for Protein Research, Osaka University

Co-authored papers 3

Chiara Pallara

Co-authored papers 3

Daisuke Kihara

Purdue University

Co-authored papers 3

Hahnbeom Park

Co-authored papers 3

Martin Zacharias

Co-authored papers 3

Eiji Kanamori

Co-authored papers 3

Brian Jim??nez-Garc??a

Utrecht University

Co-authored papers 3

Krishna Praneeth Kilambi

Co-authored papers 3

1 - 30

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