Skip to Main Content

Author Details

Paolo Nanni
Functional Genomics Center Zurich (FGCZ)-University of Zurich/ETH Zurich
2007
69
28
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36939687<i>prolfqua</i>: A Comprehensive <i>R</i>-Package for Proteomics Differential Expression Analysis.J Proteome Res2023
37686682Multi-omics Characterization of Response to PD-1 Inhibitors in Advanced Melanoma.Cancers (Basel)2023
34910565Moderate High-Pressure Superdormancy in <i>Bacillus</i> Spores: Properties of Superdormant Spores and Proteins Potentially Influencing Moderate High-Pressure Germination.Appl Environ Microbiol2022
38069752Mass Spectrometry in Proteomics: Technologies, Methods, and Research Applications for the Life Sciences.Chimia (Aarau)2022
34009726Quality standards in proteomics research facilities: Common standards and quality procedures are essential for proteomics facilities and their users.EMBO Rep2021
33504791Ancient proteins provide evidence of dairy consumption in eastern Africa.Nat Commun2021
33838350Domestic animal proteomics in the 21st century: A global retrospective and viewpoint analysis.J Proteomics2021
33530340<i>Staphylococcus aureus</i> Interferes with Streptococci Spatial Distribution and with Protein Expression of Species within a Polymicrobial Oral Biofilm.Antibiotics (Basel)2021
34298358Synthesis of photoactivable oligosaccharide derivatives from 1,2-cyclic carbamate building blocks and study of their interaction with carbohydrate-binding proteins.Carbohydr Res2021
32127685Dairy pastoralism sustained eastern Eurasian steppe populations for 5,000 years.Nat Ecol Evol2020
31840410Label-Free Quantitative Proteomics versus Antibody-Based Assays to Measure Neutrophil-Derived Enzymes in Saliva.Proteomics Clin Appl2020
32107283Genetic Profile and Functional Proteomics of Anal Squamous Cell Carcinoma: Proposal for a Molecular Classification.Mol Cell Proteomics2020
32777086Salivary proteotypes of gingivitis tolerance and resilience.J Clin Periodontol2020
32525929Bayesian networks established functional differences between breast cancer subtypes.PLoS One2020
32205193Paneth cells promote angiogenesis and regulate portal hypertension in response to microbial signals.J Hepatol2020
29466715Ovine liver proteome: Assessing mechanisms of seasonal weight loss tolerance between Merino and Damara sheep.J Proteomics2019
31501337Relief food subsistence revealed by microparticle and proteomic analyses of dental calculus from victims of the Great Irish Famine.Proc Natl Acad Sci U S A2019
31580166Computational metabolism modeling predicts risk of distant relapse-free survival in breast cancer patients.Future Oncol2019
31233901Characterization of circulating plasma proteins in dairy cows with cytological endometritis.J Proteomics2019
31402200Phosphatidylethanolamine binding protein-4 (PEBP4) is increased in IgA nephropathy and is associated with IgA-positive B-cells in affected kidneys.J Autoimmun2019
29515760Molecular characterization of breast cancer cell response to metabolic drugs.Oncotarget2018
28062797Targeted Proteomics for Multiplexed Verification of Markers of Colorectal Tumorigenesis.Mol Cell Proteomics2017
28364001Morphoproteomic Characterization of Lung Squamous Cell Carcinoma Fragmentation, a Histological Marker of Increased Tumor Invasiveness.Cancer Res2017
28135265β-Integrin de-phosphorylation by the Density-Enhanced Phosphatase DEP-1 attenuates EGFR signaling in C. elegans.PLoS Genet2017
28292943Molecular Details Underlying Dynamic Structures and Regulation of the Human 26S Proteasome.Mol Cell Proteomics2017
28182313H3K23me1 is an evolutionarily conserved histone modification associated with CG DNA methylation in Arabidopsis.Plant J2017
28366878The sheep (Ovis aries) muscle proteome: Decoding the mechanisms of tolerance to Seasonal Weight Loss using label-free proteomics.J Proteomics2017
28855612Functional proteomics outlines the complexity of breast cancer molecular subtypes.Sci Rep2017
28594844Prediction of adjuvant chemotherapy response in triple negative breast cancer with discovery and targeted proteomics.PLoS One2017
28890072Large-Scale Quantitative Proteomics Identifies the Ubiquitin Ligase Nedd4-1 as an Essential Regulator of Liver Regeneration.Dev Cell2017
27816513The longissimus thoracis muscle proteome in Alentejana bulls as affected by growth path.J Proteomics2017
28035797Combining Higher-Energy Collision Dissociation and Electron-Transfer/Higher-Energy Collision Dissociation Fragmentation in a Product-Dependent Manner Confidently Assigns Proteomewide ADP-Ribose Acceptor Sites.Anal Chem2017
26764380H3K36ac Is an Evolutionary Conserved Plant Histone Modification That Marks Active Genes.Plant Physiol2016
27760049Helicase CHD4 is an epigenetic coregulator of PAX3-FOXO1 in alveolar rhabdomyosarcoma.J Clin Invest2016
27525512H2A deubiquitinases UBP12/13 are part of the Arabidopsis polycomb group protein system.Nat Plants2016
27378031Comprehensive Proteomic Analysis of Nitrogen-Starved Mycobacterium smegmatis οpup Reveals the Impact of Pupylation on Nitrogen Stress Response.J Proteome Res2016
27282637IDH-mutant glioma specific association of rs55705857 located at 8q24.21 involves MYC deregulation.Sci Rep2016
27402088The H3 chaperone function of NASP is conserved in Arabidopsis.Plant J2016
27277118Potential of Environmental Enrichment to Prevent Transgenerational Effects of Paternal Trauma.Neuropsychopharmacology2016
27017928The goat (Capra hircus) mammary gland secretory tissue proteome as influenced by weight loss: A study using label free proteomics.J Proteomics2016
25398439PLK1 phosphorylates PAX3-FOXO1, the inhibition of which triggers regression of alveolar Rhabdomyosarcoma.Cancer Res2015
26211397Optimization of LTQ-Orbitrap Mass Spectrometer Parameters for the Identification of ADP-Ribosylation Sites.J Proteome Res2015
25883093Combined Label-Free Quantitative Proteomics and microRNA Expression Analysis of Breast Cancer Unravel Molecular Differences with Clinical Implications.Cancer Res2015
24443974Epigenetic marking of sperm by post-translational modification of histones and protamines.Epigenetics Chromatin2014
24732305Proteomics of secretory and endocytic organelles in Giardia lamblia.PLoS One2014
24958876Shigella reroutes host cell central metabolism to obtain high-flux nutrient supply for vigorous intracellular growth.Proc Natl Acad Sci U S A2014
24876255Large-Scale Proteomics of the Cassava Storage Root and Identification of a Target Gene to Reduce Postharvest Deterioration.Plant Cell2014
24567419Sorbitol dehydrogenase overexpression and other aspects of dysregulated protein expression in human precancerous colorectal neoplasms: a quantitative proteomics study.Mol Cell Proteomics2014
24562188Pathogens and host immunity in the ancient human oral cavity.Nat Genet2014
24281761Time-resolved analysis of the matrix metalloproteinase 10 substrate degradome.Mol Cell Proteomics2014
  • 1 - 50 of 69

Recommended Authors

Yansheng Liu
Yale University School of Medicine
Career Start Year 2008
Number of shared co-authors 5
F??bio C S Nogueira
Institute of Chemistry, Federal University of Rio de Janeiro
Career Start Year 2007
Number of shared co-authors 1
Athena A Schepmoes
Pacific Northwest National Laboratory
Career Start Year 2006
Number of shared co-authors 0
Therese R W Clauss
Pacific Northwest National Laboratory
Career Start Year 2005
Number of shared co-authors 0
Matthew E Monroe
Pacific Northwest National Laboratory
Career Start Year 2004
Number of shared co-authors 0
Stefan Kalkhof
Institute for Bioanalysis, Coburg University of Applied Sciences and Arts
Career Start Year 2004
Number of shared co-authors 1
Paul M Thomas
Northwestern University
Career Start Year 2003
Number of shared co-authors 1
Kai St??hler
Universitatsklinikum
Career Start Year 2002
Number of shared co-authors 0
Hanno Steen
Boston Children's Hospital, USA Harvard Medical School, Harvard Medical School
Career Start Year 2000
Number of shared co-authors 0
Marina A Gritsenko
Pacific Northwest National Laboratory
Career Start Year 2000
Number of shared co-authors 0
Peter Horvatovich
Groningen Research Institute of Pharmacy, University of Groningen
Career Start Year 1999
Number of shared co-authors 0
David A Sarracino
Harvard Partners Center For Genetics and Genomics
Career Start Year 1998
Number of shared co-authors 0
Janne Lehti??
Karolinska Institutet
Career Start Year 1997
Number of shared co-authors 0
Jo??lle Vinh
Universite PSL, LPC CNRS UMR8249
Career Start Year 1997
Number of shared co-authors 0
Si Wu
The Fourth Hospital of Hebei Medical University
Career Start Year 1995
Number of shared co-authors 0
Martin R Larsen
University of Southern Denmark
Career Start Year 1995
Number of shared co-authors 1
Christoph H Borchers
McGill University
Career Start Year 1994
Number of shared co-authors 6
Yu-Ju Chen
Institute of Chemistry
Career Start Year 1992
Number of shared co-authors 1
Ole N Jensen
VILLUM Center for Bioanalytical Sciences, University of Southern Denmark
Career Start Year 1991
Number of shared co-authors 2
Albert J R Heck
Utrecht University
Career Start Year 1991
Number of shared co-authors 6
Andrea Urbani
National Research Council (CNR)
Career Start Year 1990
Number of shared co-authors 1
Matthias Mann
Max-Planck Institute of Biochemistry
Career Start Year 1989
Number of shared co-authors 6
David R Goodlett
University of Victoria
Career Start Year 1988
Number of shared co-authors 1
Timothy J Griffin
University of Minnesota
Career Start Year 1985
Number of shared co-authors 1
Robert L Moritz
Institute for Systems Biology
Career Start Year 1985
Number of shared co-authors 6
Joshua E Elias
Addenbrooke's Hospital, University of Cambridge
Career Start Year 1985
Number of shared co-authors 0
Rainer Bischoff
Groningen Research Institute of Pharmacy, University of Groningen
Career Start Year 1982
Number of shared co-authors 1
Steven A Carr
Broad Institute of MIT and Harvard
Career Start Year 1980
Number of shared co-authors 2
Alma L Burlingame
Department of Pharmaceutical Chemistry, University of California san francisco
Career Start Year 1964
Number of shared co-authors 6
John R Yates
TheScripps Research Institute
Career Start Year 1960
Number of shared co-authors 4

Collaborators

Asa Wahlander
Co-authored papers 2
Lloyd Mayer
Co-authored papers 2
Beat W Sch??fer
Department of Oncology and Children's Research Center, University Children's Hospital
Co-authored papers 2
Ulrich Auf dem Keller
Technical University of Denmark
Co-authored papers 2
Ewa Koscielniak
Co-authored papers 1
Karl Mechtler
IMP-Institute of Molecular Pathology
Co-authored papers 1
Daniel G Anderson
Co-authored papers 1
Andrej Sali (CM4AI)
University of California San Francisco
Co-authored papers 1
Alexander Leitner
ETH Zurich
Co-authored papers 1
Holger Moch
University Hospital Zurich
Co-authored papers 1
James L Engel
David Geffen School of Medicine, University of California los angeles
Co-authored papers 1
Xiaorong Wang
University of California Irvine
Co-authored papers 1
William Lee
Co-authored papers 1
Andrew H Beck
Beth Israel Deaconess Medical Center, Harvard Medical School
Co-authored papers 1
Lars Hestbjerg Hansen
Co-authored papers 1
Eri Sakata
Max Planck Institute of Biochemistry
Co-authored papers 1
Alexander S Huszagh
University of California irvine
Co-authored papers 1
Clinton Yu
University of California Irvine
Co-authored papers 1
Scott D Rychnovsky
University of California irvine
Co-authored papers 1
Roman L Bogorad
Co-authored papers 1
Abdullah Kahraman
University of Zurich
Co-authored papers 1
Florian Beck
Max Planck Institute of Biochemistry
Co-authored papers 1
Xing Guo
Life Sciences Institute, Zhejiang University
Co-authored papers 1
Lan Huang
University of California Irvine
Co-authored papers 1
Anna Shevchenko
Max Plank Institute of Molecular Cell Biology and Genetics
Co-authored papers 1
Murat Gunel
Yale School of Medicine
Co-authored papers 1
Yingying Yang
University of California irvine
Co-authored papers 1
Damarys Loew
Institut Curie, PSL Research University
Co-authored papers 1
Julia A Vorholt
Co-authored papers 1
Steffen Gay
Co-authored papers 1
Release 1.2