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Author Details

Weida Tong
National Center for Toxicological Research
1992
343
59
Timothy Clark (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36372266Development of benchmark datasets for text mining and sentiment analysis to accelerate regulatory literature review.Regul Toxicol Pharmacol2023
36372266Development of benchmark datasets for text mining and sentiment analysis to accelerate regulatory literature review.Regul Toxicol Pharmacol2023
37679543Multi-omics data integration using ratio-based quantitative profiling with Quartet reference materials.Nat Biotechnol2023
37679545Quartet RNA reference materials improve the quality of transcriptomic data through ratio-based profiling.Nat Biotechnol2023
37674217Correcting batch effects in large-scale multiomics studies using a reference-material-based ratio method.Genome Biol2023
37932302A generative adversarial network model alternative to animal studies for clinical pathology assessment.Nat Commun2023
38012772Quartet DNA reference materials and datasets for comprehensively evaluating germline variant calling performance.Genome Biol2023
37995287PLM-ARG: antibiotic resistance gene identification using a pretrained protein language model.Bioinformatics2023
37577388Single-cell RNA-sequencing and subcellular spatial transcriptomics facilitate the translation of liver microphysiological systems for regulatory application.J Pharm Anal2023
37714406DICTrank: The largest reference list of 1318 human drugs ranked by risk of drug-induced cardiotoxicity using FDA labeling.Drug Discov Today2023
38084745Bidirectional Encoder Representations from Transformers-like large language models in patient safety and pharmacovigilance: A comprehensive assessment of causal inference implications.Exp Biol Med (Maywood)2023
37884999The Quartet Data Portal: integration of community-wide resources for multiomics quality control.Genome Biol2023
37633327DeepAmes: A deep learning-powered Ames test predictive model with potential for regulatory application.Regul Toxicol Pharmacol2023
37783850Author Correction: Quartet RNA reference materials improve the quality of transcriptomic data through ratio-based profiling.Nat Biotechnol2023
37200521TransOrGAN: An Artificial Intelligence Mapping of Rat Transcriptomic Profiles between Organs, Ages, and Sexes.Chem Res Toxicol2023
37061083Artificial intelligence and real-world data for drug and food safety - A regulatory science perspective.Regul Toxicol Pharmacol2023
36547811Assessment of the Frequency, Phenotypes, and Outcomes of Acute Liver Injury Associated with Amoxicillin/Clavulanate in 1.4 Million Patients in the Veterans Health Administration.Drug Saf2023
37540590A Weakly Supervised Deep Learning Framework for Whole Slide Classification to Facilitate Digital Pathology in Animal Study.Chem Res Toxicol2023
37487037Classifying Free Texts Into Predefined Sections Using AI in Regulatory Documents: A Case Study with Drug Labeling Documents.Chem Res Toxicol2023
38084745Bidirectional Encoder Representations from Transformers-like large language models in patient safety and pharmacovigilance: A comprehensive assessment of causal inference implications.Exp Biol Med (Maywood)2023
37714406DICTrank: The largest reference list of 1318 human drugs ranked by risk of drug-induced cardiotoxicity using FDA labeling.Drug Discov Today2023
37633327DeepAmes: A deep learning-powered Ames test predictive model with potential for regulatory application.Regul Toxicol Pharmacol2023
37487037Classifying Free Texts Into Predefined Sections Using AI in Regulatory Documents: A Case Study with Drug Labeling Documents.Chem Res Toxicol2023
38012772Quartet DNA reference materials and datasets for comprehensively evaluating germline variant calling performance.Genome Biol2023
37995287PLM-ARG: antibiotic resistance gene identification using a pretrained protein language model.Bioinformatics2023
37884999The Quartet Data Portal: integration of community-wide resources for multiomics quality control.Genome Biol2023
37783850Author Correction: Quartet RNA reference materials improve the quality of transcriptomic data through ratio-based profiling.Nat Biotechnol2023
37577388Single-cell RNA-sequencing and subcellular spatial transcriptomics facilitate the translation of liver microphysiological systems for regulatory application.J Pharm Anal2023
37540590A Weakly Supervised Deep Learning Framework for Whole Slide Classification to Facilitate Digital Pathology in Animal Study.Chem Res Toxicol2023
37932302A generative adversarial network model alternative to animal studies for clinical pathology assessment.Nat Commun2023
37679543Multi-omics data integration using ratio-based quantitative profiling with Quartet reference materials.Nat Biotechnol2023
37679545Quartet RNA reference materials improve the quality of transcriptomic data through ratio-based profiling.Nat Biotechnol2023
37674217Correcting batch effects in large-scale multiomics studies using a reference-material-based ratio method.Genome Biol2023
37061083Artificial intelligence and real-world data for drug and food safety - A regulatory science perspective.Regul Toxicol Pharmacol2023
37200521TransOrGAN: An Artificial Intelligence Mapping of Rat Transcriptomic Profiles between Organs, Ages, and Sexes.Chem Res Toxicol2023
36547811Assessment of the Frequency, Phenotypes, and Outcomes of Acute Liver Injury Associated with Amoxicillin/Clavulanate in 1.4 Million Patients in the Veterans Health Administration.Drug Saf2023
34607018A systematic comparison of hepatobiliary adverse drug reactions in FDA and EMA drug labeling reveals discrepancies.Drug Discov Today2022
35848999Best practice and reproducible science are required to advance artificial intelligence in real-world applications.Brief Bioinform2022
35768876Deep oncopanel sequencing reveals within block position-dependent quality degradation in FFPE processed samples.Genome Biol2022
36237397Combined Risk Assessment of Food-derived Coumarin with <i>in Silico</i> Approaches.Food Saf (Tokyo)2022
36034596Accurate species identification of food-contaminating beetles with quality-improved elytral images and deep learning.Front Artif Intell2022
36011614NeuroCORD: A Language Model to Facilitate COVID-19-Associated Neurological Disorder Studies.Int J Environ Res Public Health2022
35680918Ultra-deep multi-oncopanel sequencing of benchmarking samples with a wide range of variant allele frequencies.Sci Data2022
35418127Ultra-deep sequencing data from a liquid biopsy proficiency study demonstrating analytic validity.Sci Data2022
36127716Author Correction: Towards accurate and reliable resolution of structural variants for clinical diagnosis.Genome Biol2022
36425225Adaptability of AI for safety evaluation in regulatory science: A case study of drug-induced liver injury.Front Artif Intell2022
36518910Corrigendum: DeepCarc: Deep learning-powered carcinogenicity prediction using model-level representation.Front Artif Intell2022
36561659DeepCausality: A general AI-powered causal inference framework for free text: A case study of LiverTox.Front Artif Intell2022
35296201Integrative approaches for studying the role of noncoding RNAs in influencing drug efficacy and toxicity.Expert Opin Drug Metab Toxicol2022
34980216Assessing reproducibility of inherited variants detected with short-read whole genome sequencing.Genome Biol2022
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Collaborators

Huixiao Hong
Co-authored papers 115
Hong Fang
National Center for Toxicological Research (NCTR)
Co-authored papers 105
Ming Shi
Co-authored papers 89
Zhichao Liu
Co-authored papers 79
Roger Perkins
Co-authored papers 71
Joshua Xu
Co-authored papers 55
Baitang Ning
Co-authored papers 42
Minjun Chen
Co-authored papers 42
Zhenqiang Su
Co-authored papers 38
Weigong Ge
Co-authored papers 31
Tieliu Shi
Co-authored papers 28
Qian Xie
Co-authored papers 25
Shraddha Thakkar
Center for Drug Evaluations and Research (CDER)
Co-authored papers 25
Stephen C Harris
Co-authored papers 22
James C Fuscoe
Co-authored papers 22
Charles Wang
Co-authored papers 18
Xiaohui Fan
College of Life Sciences, Zhejiang University
Co-authored papers 16
Wenjun Bao
SAS Institute Inc Cary
Co-authored papers 16
Wendell D Jones
Department of Bioinformatics and Clinical Systems
Co-authored papers 15
Federico Goodsaid
Co-authored papers 14
Wenming Xiao
Human Phenome Institute and Shanghai Cancer Center, Fudan University
Co-authored papers 14
Rebecca Kusko
Immuneering Corporation
Co-authored papers 14
Russell D Wolfinger
SAS Institute
Co-authored papers 13
Pierre R Bushel
Co-authored papers 13
Andreas Scherer
Institute for Molecular Medicine Finland (FIMM), University of Helsinki
Co-authored papers 13
Tao Han
Co-authored papers 12
Christopher E Mason
Feil Family Brain and Mind Research Institute.
Co-authored papers 12
Cesare Furlanello
Bruno Kessler Foundation
Co-authored papers 11
Jean Thierry-Mieg
Co-authored papers 10
Feng Qian
Co-authored papers 10
Release 1.2