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Author Details

Jean-Pierre A Kocher
Mayo Clinic
1991
121
40
PMIDPaper TitleJournal TitlePublished Year
33990473Quality Performance of a Transfer Center Reduces Interhospital Transfer and Direct Admission-Related ED Evaluations.Am J Med Qual2022
35716010DNA methylation signature predicts cancer response to demethylation agents from profiling diverse cancer cell lines.Cancer Commun (Lond)2022
36271076CRISPR/Cas9-mediated excision of ALS/FTD-causing hexanucleotide repeat expansion in C9ORF72 rescues major disease mechanisms in vivo and in vitro.Nat Commun2022
36008405In vivo lentiviral vector gene therapy to cure hereditary tyrosinemia type 1 and prevent development of precancerous and cancerous lesions.Nat Commun2022
35022670Telogator: a method for reporting chromosome-specific telomere lengths from long reads.Bioinformatics2022
31808791CpGtools: a python package for DNA methylation analysis.Bioinformatics2021
33648520Determining mutational burden and signature using RNA-seq from tumor-only samples.BMC Med Genomics2021
33816122Elevated Expression of Plasminogen Activator Inhibitor (PAI-1/SERPINE1) is Independent from rs1799889 Genotypes in Arthrofibrosis.Meta Gene2021
34550971Exogene: A performant workflow for detecting viral integrations from paired-end next-generation sequencing data.PLoS One2021
34377961P<sup>2</sup>T<sup>2</sup>: Protein Panoramic annoTation Tool for the interpretation of protein coding genetic variants.JAMIA Open2021
34394200PB-Motif-A Method for Identifying Gene/Pseudogene Rearrangements With Long Reads: An Application to CYP21A2 Genotyping.Front Genet2021
34234399Re-Evaluate Fusion Genes in Prostate Cancer.Cancer Inform2021
33975459Surface Roughness of Titanium Orthopedic Implants Alters the Biological Phenotype of Human Mesenchymal Stromal Cells.Tissue Eng Part A2021
32593486Human Fibrosis: Is There Evidence for a Genetic Predisposition in Musculoskeletal Tissues?J Arthroplasty2020
31787246Combining copy number, methylation markers, and mutations as a panel for endometrial cancer detection via intravaginal tampon collection.Gynecol Oncol2020
31797631Coverage profile correction of shallow-depth circulating cell-free DNA sequencing via multidistance learning.Pac Symp Biocomput2020
33213041A Potential Theragnostic Regulatory Axis for Arthrofibrosis Involving Adiponectin (ADIPOQ) Receptor 1 and 2 (ADIPOR1 and ADIPOR2), TGFβ1, and Smooth Muscle α-Actin (ACTA2).J Clin Med2020
32913881<i>Ex Vivo</i> Cell Therapy by Ectopic Hepatocyte Transplantation Treats the Porcine Tyrosinemia Model of Acute Liver Failure.Mol Ther Methods Clin Dev2020
32594533Aberrant immunohistochemical expression of CD4 as a rare finding in metastatic melanoma.J Cutan Pathol2020
30878468Ccne1 Overexpression Causes Chromosome Instability in Liver Cells and Liver Tumor Development in Mice.Gastroenterology2019
31214875Prognostic subclass of intrahepatic cholangiocarcinoma by integrative molecular-clinical analysis and potential targeted approach.Hepatol Int2019
31101622Recurrent <i>MSC</i> <sup>E116K</sup> mutations in ALK-negative anaplastic large cell lymphoma.Blood2019
30704449Predict drug sensitivity of cancer cells with pathway activity inference.BMC Med Genomics2019
28926134Early genetic aberrations in patients with sporadic colorectal cancer.Mol Carcinog2018
30021563Correction to: the impact of pharmacokinetic gene profiles across human cancers.BMC Cancer2018
30016933HGT-ID: an efficient and sensitive workflow to detect human-viral insertion sites using next-generation sequencing data.BMC Bioinformatics2018
30255803Indel sensitive and comprehensive variant/mutation detection from RNA sequencing data for precision medicine.BMC Med Genomics2018
29932737Improving Single-Nucleotide Polymorphism-Based Fetal Fraction Estimation of Maternal Plasma Circulating Cell-Free DNA Using Bayesian Hierarchical Models.J Comput Biol2018
30577744Detection and visualization of complex structural variants from long reads.BMC Bioinformatics2018
30347404Novel Neural Network Approach to Predict Drug-Target Interactions Based on Drug Side Effects and Genome-Wide Association Studies.Hum Hered2018
30482155A data science approach for the classification of low-grade and high-grade ovarian serous carcinomas.BMC Genomics2018
29783934The impact of pharmacokinetic gene profiles across human cancers.BMC Cancer2018
29618619Prevalent Homozygous Deletions of Type I Interferon and Defensin Genes in Human Cancers Associate with Immunotherapy Resistance.Clin Cancer Res2018
29559662Author Correction: UClncR: Ultrafast and comprehensive long non-coding RNA detection from RNA-seq.Sci Rep2018
29267858Hybrid-denovo: a de novo OTU-picking pipeline integrating single-end and paired-end 16S sequence tags.Gigascience2018
27473065Indel detection from RNA-seq data: tool evaluation and strategies for accurate detection of actionable mutations.Brief Bioinform2017
30761385Molecular Modeling and Functional Analysis of Exome Sequencing-Derived Variants of Unknown Significance Identify a Novel, Constitutively Active FGFR2 Mutant in Cholangiocarcinoma.JCO Precis Oncol2017
28482068mTCTScan: a comprehensive platform for annotation and prioritization of mutations affecting drug sensitivity in cancers.Nucleic Acids Res2017
28302177cepip: context-dependent epigenomic weighting for prioritization of regulatory variants and disease-associated genes.Genome Biol2017
28376176Tumor Sequencing and Patient-Derived Xenografts in the Neoadjuvant Treatment of Breast Cancer.J Natl Cancer Inst2017
28472449Exploring genetic associations with ceRNA regulation in the human genome.Nucleic Acids Res2017
28423702Experience with precision genomics and tumor board, indicates frequent target identification, but barriers to delivery.Oncotarget2017
28967791Adipose tissue DNA methylome changes in development of new-onset diabetes after kidney transplantation.Epigenomics2017
29079769UClncR: Ultrafast and comprehensive long non-coding RNA detection from RNA-seq.Sci Rep2017
28981748Linnorm: improved statistical analysis for single cell RNA-seq expression data.Nucleic Acids Res2017
29190829A comprehensive analysis of breast cancer microbiota and host gene expression.PLoS One2017
28975018Comprehensive Genomic Profiling of a Rare Thyroid Follicular Dendritic Cell Sarcoma.Rare Tumors2017
29161425Corrigendum: Linnorm: improved statistical analysis for single cell RNA-seq expression data.Nucleic Acids Res2017
28532394CircularLogo: A lightweight web application to visualize intra-motif dependencies.BMC Bioinformatics2017
26210358VCF-Miner: GUI-based application for mining variants and annotations stored in VCF files.Brief Bioinform2016
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Aleksandar Milosavljevic
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Elaine R Mardis
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Collaborators

Yan W Asmann
Mayo Clinic
Co-authored papers 14
Hugues Sicotte
Mayo Clinic
Co-authored papers 11
Chen Wang
Center for Individualized Medicine, Mayo Clinic
Co-authored papers 11
High Seng Chai
Mayo Clinic
Co-authored papers 10
Eric W Klee
Mayo Clinic College of Medicine and Science
Co-authored papers 10
Asha A Nair
Mayo Clinic
Co-authored papers 9
Michael T Zimmermann
Medical College of Wisconsin
Co-authored papers 8
Terry M Therneau
Mayo Clinic
Co-authored papers 8
Pak C Sham
the University of Hong Kong
Co-authored papers 7
Panwen Wang
Co-authored papers 7
Liewei Wang
Mayo Clinic
Co-authored papers 7
Naresh Prodduturi
Mayo Clinic
Co-authored papers 7
Surendra Dasari
Mayo Clinic
Co-authored papers 5
Hongfang Liu
Mayo Clinic
Co-authored papers 5
Eric D Wieben
Mayo Clinic Rochester
Co-authored papers 5
Richard M Weinshilboum
Mayo Clinic
Co-authored papers 5
Shoshana J Wodak
VIB-VUB Center for Structural Biology
Co-authored papers 4
Lewis R Roberts
Co-authored papers 4
Andre J van Wijnen
Co-authored papers 4
Alan H Bryce
Mayo Clinic
Co-authored papers 4
Marianne Rooman
Co-authored papers 3
Xiaoyang Ruan
University of Texas Health Science Center at Houston, Mayo Clinic
Co-authored papers 3
Robert W Williams
Mayo Clinic
Co-authored papers 3
Gregory A Poland
Mayo Clinic Vaccine Research Group
Co-authored papers 3
Kent R Bailey
Mayo Clinic
Co-authored papers 3
Elizabeth J Atkinson
Mayo Clinic
Co-authored papers 3
Judy C Boughey
Mayo Clinic
Co-authored papers 3
Khader Shameer
School of Public Health, Imperial College London
Co-authored papers 3
Matthew P Goetz
Mayo Clinic
Co-authored papers 3
Alexander Keith Stewart
Co-authored papers 3
Release 1.2