Author details

Full Name

Minkyu Kim

Affiliation

University of California san francisco

ORCID

Career Start Year

1995

Papers

H Index

Expertise

CM4AI Collaborator

Andrej Sali (CM4AI)

PMID	Paper Title	Journal Title	Published Year
37213254	Current proteomics methods applicable to dissecting the DNA damage response.	NAR Cancer	2023
37220749	A multi-scale map of protein assemblies in the DNA damage response.	Cell Syst	2023
36273492	Resistance to ATR Inhibitors Is Mediated by Loss of the Nonsense-Mediated Decay Factor UPF2.	Cancer Res	2022
35439318	A Whole-Genome CRISPR Screen Identifies AHR Loss as a Mechanism of Resistance to a PARP7 Inhibitor.	Mol Cancer Ther	2022
34346171	Preclinical mouse model of optical coherence tomography for subcortical brain imaging without dissection.	J Biophotonics	2021
34591613	Interpretation of cancer mutations using a multiscale map of protein systems.	Science	2021
34591612	A protein interaction landscape of breast cancer.	Science	2021
34591642	A protein network map of head and neck cancer reveals PIK3CA mutant drug sensitivity.	Science	2021
32353859	A SARS-CoV-2 protein interaction map reveals targets for drug repurposing.	Nature	2020
31790894	Synergistic anticancer effect of combined use of Trichosanthes kirilowii with cisplatin and pemetrexed enhances apoptosis of H1299 non-small-cell lung cancer cells via modulation of ErbB3.	Phytomedicine	2020
33425102	Visualization of left ventricular Purkinje fiber distribution using widefield optical coherence microscopy.	Int J Clin Exp Pathol	2020
32645325	The Global Phosphorylation Landscape of SARS-CoV-2 Infection.	Cell	2020
31288129	Mapping the protein-protein and genetic interactions of cancer to guide precision medicine.	Curr Opin Genet Dev	2019
29422678	Clinical Translation of Tethered Confocal Microscopy Capsule for Unsedated Diagnosis of Eosinophilic Esophagitis.	Sci Rep	2018
27636715	Large-area spectrally encoded confocal endomicroscopy of the human esophagus in vivo.	Lasers Surg Med	2017
26784655	Association of DNA methylation and monoamine oxidase A gene expression in the brains of different dog breeds.	Gene	2016
27076633	Exosome Cofactors Connect Transcription Termination to RNA Processing by Guiding Terminated Transcripts to the Appropriate Exonuclease within the Nuclear Exosome.	J Biol Chem	2016
25722373	Unraveling the mechanistic features of RNA polymerase II termination by the 5'-3' exoribonuclease Rat1.	Nucleic Acids Res	2015
25574443	Miniature objective lens with variable focus for confocal endomicroscopy.	Biomed Opt Express	2014
26134959	Comprehensive confocal endomicroscopy of the esophagus in vivo.	Endosc Int Open	2014
23070835	3-D shape measurement endoscope using a single-lens system.	Int J Comput Assist Radiol Surg	2013
24466487	Tethered confocal endomicroscopy capsule for diagnosis and monitoring of eosinophilic esophagitis.	Biomed Opt Express	2013
24156054	Endoscopic probe optics for spectrally encoded confocal microscopy.	Biomed Opt Express	2013
24196955	The RNA polymerase II C-terminal domain-interacting domain of yeast Nrd1 contributes to the choice of termination pathway and couples to RNA processing by the nuclear exosome.	J Biol Chem	2013
20818393	Cooperative interaction of transcription termination factors with the RNA polymerase II C-terminal domain.	Nat Struct Mol Biol	2010
19679665	Phosphorylation of the yeast Rpb1 C-terminal domain at serines 2, 5, and 7.	J Biol Chem	2009
18280237	Transcription termination and RNA degradation contribute to silencing of RNA polymerase II transcription within heterochromatin.	Mol Cell	2008
18660819	The Nrd1-Nab3-Sen1 termination complex interacts with the Ser5-phosphorylated RNA polymerase II C-terminal domain.	Nat Struct Mol Biol	2008
17347438	Dynamics of replication-independent histone turnover in budding yeast.	Science	2007
17157255	Distinct pathways for snoRNA and mRNA termination.	Mol Cell	2006
16122352	Single-nucleosome mapping of histone modifications in S. cerevisiae.	PLoS Biol	2005
14731395	Phosphorylation of serine 2 within the RNA polymerase II C-terminal domain couples transcription and 3' end processing.	Mol Cell	2004
15565157	The yeast Rat1 exonuclease promotes transcription termination by RNA polymerase II.	Nature	2004
14739930	Transitions in RNA polymerase II elongation complexes at the 3' ends of genes.	EMBO J	2004
12773564	Methylation of histone H3 by Set2 in Saccharomyces cerevisiae is linked to transcriptional elongation by RNA polymerase II.	Mol Cell Biol	2003
12819204	Organization and function of APT, a subcomplex of the yeast cleavage and polyadenylation factor involved in the formation of mRNA and small nucleolar RNA 3'-ends.	J Biol Chem	2003
12074602	Fibrillarin binds to a 3' cis-regulatory element in pre-mRNA of uvi15+ in fission yeast.	Biochem Biophys Res Commun	2002
12242279	RNA polymerase II elongation factors of Saccharomyces cerevisiae: a targeted proteomics approach.	Mol Cell Biol	2002
12521309	Post-transcriptional regulation of ura4+ gene expression by glucose in Schizosaccharomyces pombe.	Mol Cells	2002
11751637	Opposing effects of Ctk1 kinase and Fcp1 phosphatase at Ser 2 of the RNA polymerase II C-terminal domain.	Genes Dev	2001
10954610	The stress-activated MAP kinase Sty1/Spc1 and a 3'-regulatory element mediate UV-induced expression of the uvi15(+) gene at the post-transcriptional level.	Nucleic Acids Res	2000
9258332	Identification and expression of uvi31+, a UV-inducible gene from Schizosaccharomyces pombe.	Environ Mol Mutagen	1997
7898433	Characterization of uvi15+, a stress-inducible gene from Schizosaccharomyces pombe.	Mol Gen Genet	1995

1 - 43 of 43

Maria J Aristizabal

Queen's University

Career Start Year 2011

Number of shared co-authors 2

Raghuvar Dronamraju

University of North Carolina at Chapel Hill School of Medicine

Career Start Year 2009

Number of shared co-authors 6

Ajay A Vashisht

David Geffen School of Medicine, University of California los angeles

Career Start Year 2005

Number of shared co-authors 2

Jie Luo

Institute for Systems Biology

Career Start Year 2004

Number of shared co-authors 2

Christopher C Ebmeier

University of Colorado

Career Start Year 2004

Number of shared co-authors 3

Sean E Hanlon

Drew University, National Institutes of Health, Rutgers University New Brunswick, University of North Carolina at Chapel Hill

Career Start Year 2003

Number of shared co-authors 0

Yoshito Kakihara

Niigata University

Career Start Year 2001

Number of shared co-authors 5

Tam??s Fischer

The Australian National University

Career Start Year 2000

Number of shared co-authors 2

Stephen Watt

Wellcome Sanger Institute

Career Start Year 1999

Number of shared co-authors 3

Aaron Aslanian

Salk Institute for Biological Studies

Career Start Year 1998

Number of shared co-authors 1

Krishna M Sinha

The University of Texas MD Anderson Cancer Center

Career Start Year 1998

Number of shared co-authors 1

Michael-Christopher Keogh

EpiCypher Inc.

Career Start Year 1997

Number of shared co-authors 19

Fran??ois Robert

Institut de recherches cliniques de Montreal

Career Start Year 1996

Number of shared co-authors 5

James A Wohlschlegel

David Geffen School of Medicine, University of California Los Angeles

Career Start Year 1996

Number of shared co-authors 2

Vishwanath R Iyer

Indian Institute of Technology Bombay

Career Start Year 1995

Number of shared co-authors 0

Jeffrey A Ranish

Institute for Systems Biology

Career Start Year 1991

Number of shared co-authors 3

David P Toczyski

University of California San Francisco

Career Start Year 1991

Number of shared co-authors 8

Grant W Brown

University of Toronto, 1 King's College Circle

Career Start Year 1991

Number of shared co-authors 7

Frank C P Holstege

Princess Maxima Center for Pediatric Oncology

Career Start Year 1990

Number of shared co-authors 9

Jesper Q Svejstrup

Panum Institute, University of Copenhagen

Career Start Year 1990

Number of shared co-authors 4

Stephen P Jackson

Mission Therapeutics Ltd. Glenn Berge Building

Career Start Year 1987

Number of shared co-authors 3

Hiten D Madhani

University of California san francisco

Career Start Year 1986

Number of shared co-authors 15

Hediye Erdjument-Bromage

Neuroscience Institute, NYU Grossman School of Medicine

Career Start Year 1984

Number of shared co-authors 4

Marian J A Groot Koerkamp

Princess Maxima Center for Pediatric Oncology Research

Career Start Year 1983

Number of shared co-authors 3

Angus I Lamond

University of Dundee

Career Start Year 1982

Number of shared co-authors 0

Stephen J Elledge

Howard Hughes Medical Institute, Brigham and Women's Hospital, Harvard Medical School

Career Start Year 1982

Number of shared co-authors 5

Susan M Gasser

L'Institut Suisse de Recherche Experimentale sur le Cancer (ISREC) Foundation

Career Start Year 1982

Number of shared co-authors 3

Michael Snyder

Stanford University

Career Start Year 1981

Number of shared co-authors 13

Danny Reinberg

HHMI/NYU Langone School of Medicine

Career Start Year 1980

Number of shared co-authors 2

Ryuji Kobayashi

Tokyo University of Science

Career Start Year 1979

Number of shared co-authors 1

row(s) 1 - 30 of 30

Stephen Buratowski

Harvard Medical School

Co-authored papers 15

Nevan J Krogan (CM4AI)

University of California San Francisco

Co-authored papers 14

Jack F Greenblatt

College Street, University of Toronto

Co-authored papers 6

Trey Ideker (CM4AI)

University of California San Diego

Co-authored papers 6

Mehdi Bouhaddou

J. David Gladstone Institutes

Co-authored papers 6

Danielle L Swaney

J. David Gladstone Institutes

Co-authored papers 6

Fan Zheng

University of California San Diego

Co-authored papers 4

Margaret Soucheray

J. David Gladstone Institutes

Co-authored papers 4

Lidia Vasiljeva

University of Oxford

Co-authored papers 4

Oliver J Rando

University of Massachusetts Chan Medical School

Co-authored papers 4

Jisoo Park

University of California San Diego san francisco

Co-authored papers 4

Beril Tutuncuoglu

University of California san francisco

Co-authored papers 4

Kari A Herrington

Center for Advanced Light Microscopy, University of California san francisco

Co-authored papers 3

Michael J McGregor

J. David Gladstone Institutes

Co-authored papers 3

Helene Foussard

Quantitative Biosciences Institute (QBI), University of California san francisco

Co-authored papers 3

Seong Hoon Ahn

College of Science and Convergence Technology, Hanyang University

Co-authored papers 3

Morgan E Diolaiti

University of California San Francisco

Co-authored papers 3

Kirsten Obernier (CM4AI)

University of California San Francisco

Co-authored papers 3

Alan Ashworth

UCSF Helen Diller Family Comprehensive Cancer Center

Co-authored papers 3

Kyumin Kim

Inje Institute of Pharmaceutical Sciences and Research, Inje University

Co-authored papers 3

Jason F Kreisberg

University of California San Diego

Co-authored papers 3

Danish Memon

European Bioinformatics Institute

Co-authored papers 2

Dexter Pratt (CM4AI)

UC San Diego

Co-authored papers 2

Robyn M Kaake

J. David Gladstone Institutes

Co-authored papers 2

Jiewei Xu

Quantitative Biosciences Institute (QBI), University of California san francisco

Co-authored papers 2

Ying Shi

Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences

Co-authored papers 2

Patrick C O'Leary

University of California San Francisco

Co-authored papers 2

David E Gordon

Emory University

Co-authored papers 2

Nir Friedman

Co-authored papers 2

Yiming Cai

Institute of Mental Health and Woodbridge Hospital

Co-authored papers 2

1 - 30

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