Author details

Full Name

Mehmet KoyutÃ¼rk

Affiliation

ORCID

Career Start Year

1999

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37350922	Characterizing Disparities in the Treatment of Intimate Partner Violence.		2023
37645993	Exploring Temporal and Sex-Linked Dysregulation in Alzheimer's Disease Phospho-Proteome.	bioRxiv	2023
36888574	Adverse health correlates of intimate partner violence against older women: Mining electronic health records.		2023
36806598	Differences in intracellular protein levels in monocytes and CD4 lymphocytes between bipolar depressed patients and healthy controls: A pilot study with tyramine-based signal-amplified flow cytometry.		2023
37383644	Systematic Investigation of Meta-Analysis Data on Treatment Effectiveness for Physical, Psychological, and Sexual Intimate Partner Violence Perpetration.		2023
36540966	Prediction of Kinase-Substrate Associations Using The Functional Landscape of Kinases and Phosphorylation Sites.	Pac Symp Biocomput	2023
36676744	Divergent Directionality of Immune Cell-Specific Protein Expression between Bipolar Lithium Responders and Non-Responders Revealed by Enhanced Flow Cytometry.		2023
37351795	Comprehensive Analysis of Electronic Health Records to Characterize The Association Between Intimate Partner Violence and Mental Health.		2023
35342205	Protein Biomarkers in Monocytes and CD4 Lymphocytes for Predicting Lithium Treatment Response of Bipolar Disorder: a Feasibility Study with Tyramine-Based Signal-Amplified Flow Cytometry.		2022
35944844	Temporal and Sex-Linked Protein Expression Dynamics in a Familial Model of Alzheimer's Disease.	Mol Cell Proteomics	2022
35731218	Functional characterization of co-phosphorylation networks.	Bioinformatics	2022
35210415	Circulating microbial content in myeloid malignancy patients is associated with disease subtypes and patient outcomes.	Nat Commun	2022
32730576	Co-phosphorylation networks reveal subtype-specific signaling modules in breast cancer.	Bioinformatics	2021
33691006	Co-occurrence Patterns of Intimate Partner Violence.	Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing	2021
34152393	Node similarity-based graph convolution for link prediction in biological networks.		2021
33608514	Robust inference of kinase activity using functional networks.	Nat Commun	2021
33762634	Data-driven identification of subtypes of intimate partner violence.	Scientific Reports	2021
33287806	Interplay between traumatic brain injury and intimate partner violence: data driven analysis utilizing electronic health records.	BMC Women's Health	2020
32294194	Integrated querying and version control of context-specific biological networks.	Database : the journal of biological databases and curation	2020
32044914	DeepKinZero: zero-shot learning for predicting kinase-phosphosite associations involving understudied kinases.		2020
33088491	Identifying health correlates of intimate partner violence against pregnant women.	Health Information Science and Systems	2020
30988671	Myometrial Transcriptional Signatures of Human Parturition.	Front Genet	2019
30148686	ELF3 is an antagonist of oncogenic-signalling-induced expression of EMT-TF ZEB1.	Cancer Biology and Therapy	2019
30923571	Characterizing human genomic coevolution in locus-gene regulatory interactions.	BioData Mining	2019
30811403	CoPhosK: A method for comprehensive kinase substrate annotation using co-phosphorylation analysis.	PLoS Comput Biol	2019
31216985	Cross-population analysis for functional characterization of type II diabetes variants.	BMC Bioinformatics	2019
31211832	Interplay of transcriptional signaling by progesterone, cyclic AMP, and inflammation in myometrial cells: implications for the control of human parturition.	Mol Hum Reprod	2019
31191621	Corrigendum: Myometrial Transcriptional Signatures of Human Parturition.	Front Genet	2019
27959818	Querying of Disparate Association and Interaction Data in Biomedical Applications.	IEEE/ACM Transactions on Computational Biology and Bioinformatics	2018
28113734	Visually Meaningful Histopathological Features for Automatic Grading of Prostate Cancer.	IEEE J Biomed Health Inform	2017
28961369	Phosphoproteomics Profiling of Nonsmall Cell Lung Cancer Cells Treated with a Novel Phosphatase Activator.	Proteomics	2017
28605458	Prioritizing tests of epistasis through hierarchical representation of genomic redundancies.	Nucleic Acids Research	2017
28435184	Mining Electronic Health Records Data: Domestic Violence and Adverse Health Effects.	Journal of Family Violence	2017
28453667	Linearity of network proximity measures: implications for set-based queries and significance testing.	Bioinformatics	2017
28332499	Corrigendum: Drug Response Prediction as a Link Prediction Problem.	Scientific Reports	2017
28655153	The KSEA App: a web-based tool for kinase activity inference from quantitative phosphoproteomics.	Bioinformatics	2017
27362987	Pluribus-Exploring the Limits of Error Correction Using a Suffix Tree.	IEEE/ACM Transactions on Computational Biology and Bioinformatics	2017
28067293	Drug Response Prediction as a Link Prediction Problem.	Scientific Reports	2017
27896986	NETWORK MAP OF ADVERSE HEALTH EFFECTS AMONG VICTIMS OF INTIMATE PARTNER VIOLENCE.	Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing	2017
27829360	Disease gene prioritization by integrating tissue-specific molecular networks using a robust multi-network model.	BMC Bioinformatics	2016
27835645	PoCos: Population Covering Locus Sets for Risk Assessment in Complex Diseases.	PLoS Computational Biology	2016
28194175	MOBAS: identification of disease-associated protein subnetworks using modularity-based scoring.	EURASIP J Bioinform Syst Biol	2015
26453823	Whole-exome sequencing enhances prognostic classification of myeloid malignancies.	J Biomed Inform	2015
26683094	Network-Based Integration of Disparate Omic Data To Identify "Silent Players" in Cancer.	PLoS Comput Biol	2015
24597945	DB2: a probabilistic approach for accurate detection of tandem duplication breakpoints using paired-end reads.	BMC Genomics	2014
25780335	Comprehensive evaluation of composite gene features in cancer outcome prediction.	Cancer Informatics	2014
25129063	Discovery of common sequences absent in the human reference genome using pooled samples from next generation sequencing.	BMC Genomics	2014
24068912	Network signatures of survival in glioblastoma multiforme.	PLoS Comput Biol	2013
23173715	Identifying stage-specific protein subnetworks for colorectal cancer.	BMC Proc	2012
22694839	Gene interaction enrichment and network analysis to identify dysregulated pathways and their interactions in complex diseases.	BMC Syst Biol	2012