Author details

Full Name

Diana Murray

Affiliation

Columbia University Irving Medical Center

ORCID

Career Start Year

1997

Papers

H Index

Expertise

CM4AI Collaborator

Andrej Sali (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36824919	Network-based elucidation of colon cancer drug resistance by phosphoproteomic time-series analysis.	bioRxiv	2023
36776141	PrePCI: A structure- and chemical similarity-informed database of predicted protein compound interactions.	Protein Sci	2023
36909476	PrePPI: A structure informed proteome-wide database of protein-protein interactions.	bioRxiv	2023
36933822	PrePPI: A Structure Informed Proteome-wide Database of Protein-Protein Interactions.	J Mol Biol	2023
32929263	Oncoprotein-specific molecular interaction maps (SigMaps) for cancer network analyses.	Nat Biotechnol	2021
33744294	Integrating 3D structural information into systems biology.	J Biol Chem	2021
27770567	A computational interactome and functional annotation for the human proteome.	Elife	2016
22787157	Protein kinase CÎ¸ C2 domain is a phosphotyrosine binding module that plays a key role in its activation.	J Biol Chem	2012
21828048	Genome-wide structural analysis reveals novel membrane binding properties of AP180 N-terminal homology (ANTH) domains.	J Biol Chem	2011
20383749	High-throughput computational structure-based characterization of protein families: START domains and implications for structural genomics.	J Struct Funct Genomics	2010
19217386	Outcome of a workshop on applications of protein models in biomedical research.	Structure	2009
19580753	Molecular dynamics simulations of PIP2 and PIP3 in lipid bilayers: determination of ring orientation, and the effects of surface roughness on a Poisson-Boltzmann description.	Biophys J	2009
18401344	A molecular switch required for retrovirus assembly participates in the hexagonal immature lattice.	EMBO J	2008
18502797	The "electrostatic-switch" mechanism: Monte Carlo study of MARCKS-membrane interaction.	Biophys J	2008
18709443	Structure of an acetyl-CoA binding protein from Staphylococcus aureus representing a novel subfamily of GCN5-related N-acetyltransferase-like proteins.	J Struct Funct Genomics	2008
17154423	Strategies for high-throughput comparative modeling: applications to leverage analysis in structural genomics and protein family organization.	Proteins	2007
17641687	The structural basis of novel endosome anchoring activity of KIF16B kinesin.	EMBO J	2007
17581820	Structural and membrane binding analysis of the Phox homology domain of Bem1p: basis of phosphatidylinositol 4-phosphate specificity.	J Biol Chem	2007
17430887	Binding of phosphoinositide-specific phospholipase C-zeta (PLC-zeta) to phospholipid membranes: potential role of an unstructured cluster of basic residues.	J Biol Chem	2007
17392361	Electrostatic interactions drive membrane association of the human immunodeficiency virus type 1 Gag MA domain.	J Virol	2007
16236797	Specific translocation of protein kinase Calpha to the plasma membrane requires both Ca2+ and PIP2 recognition by its C2 domain.	Mol Biol Cell	2006
16931517	Unique membrane interaction mode of group IIF phospholipase A2.	J Biol Chem	2006
16928468	The role of electrostatics in protein-membrane interactions.	Biochim Biophys Acta	2006
16489752	Computational analysis of the membrane association of group IIA secreted phospholipases A2: a differential role for electrostatics.	Biochemistry	2006
15691756	To B or not to B: PIP2 answers the question.	Dev Cell	2005
16216583	Retroviral matrix domains share electrostatic homology: models for membrane binding function throughout the viral life cycle.	Structure	2005
16251366	Solution structure of Archaeglobus fulgidis peptidyl-tRNA hydrolase (Pth2) provides evidence for an extensive conserved family of Pth2 enzymes in archea, bacteria, and eukaryotes.	Protein Sci	2005
16319880	Plasma membrane phosphoinositide organization by protein electrostatics.	Nature	2005
15858007	Biochemical characterization of rous sarcoma virus MA protein interaction with membranes.	J Virol	2005
15930006	High-quality homology models derived from NMR and X-ray structures of E. coli proteins YgdK and Suf E suggest that all members of the YgdK/Suf E protein family are enhancers of cysteine desulfurases.	Protein Sci	2005
15882417	A glutamate-alanine-leucine (EAL) domain protein of Salmonella controls bacterial survival in mice, antioxidant defence and killing of macrophages: role of cyclic diGMP.	Mol Microbiol	2005
15965736	NMR solution structure of Thermotoga maritima protein TM1509 reveals a Zn-metalloprotease-like tertiary structure.	J Struct Funct Genomics	2005
15994899	X-ray reflectivity studies of cPLA2{alpha}-C2 domains adsorbed onto Langmuir monolayers of SOPC.	Biophys J	2005
16079140	The origin of C1A-C2 interdomain interactions in protein kinase Calpha.	J Biol Chem	2005
15955874	An electrostatic engine model for autoinhibition and activation of the epidermal growth factor receptor (EGFR/ErbB) family.	J Gen Physiol	2005
13679516	The calcium binding loops of the cytosolic phospholipase A2 C2 domain specify targeting to Golgi and ER in live cells.	Mol Biol Cell	2004
15465852	Helical packing patterns in membrane and soluble proteins.	Biophys J	2004
15491136	Interfacial binding of bee venom secreted phospholipase A2 to membranes occurs predominantly by a nonelectrostatic mechanism.	Biochemistry	2004
15452113	The molecular basis of the differential subcellular localization of FYVE domains.	J Biol Chem	2004
15475361	Mechanism of membrane binding of the phospholipase D1 PX domain.	J Biol Chem	2004
15023338	Genome-wide analysis of membrane targeting by S. cerevisiae pleckstrin homology domains.	Mol Cell	2004
15041659	Electrostatic sequestration of PIP2 on phospholipid membranes by basic/aromatic regions of proteins.	Biophys J	2004
15041641	A computational model for the electrostatic sequestration of PI(4,5)P2 by membrane-adsorbed basic peptides.	Biophys J	2004
15096641	The NMR solution structure of the 30S ribosomal protein S27e encoded in gene RS27_ARCFU of Archaeoglobus fulgidis reveals a novel protein fold.	Protein Sci	2004
12740367	Contrasting membrane interaction mechanisms of AP180 N-terminal homology (ANTH) and epsin N-terminal homology (ENTH) domains.	J Biol Chem	2003
12930993	Molecular modeling of the membrane targeting of phospholipase C pleckstrin homology domains.	Protein Sci	2003
12706728	Computer modeling of the membrane interaction of FYVE domains.	J Mol Biol	2003
12556460	Membrane binding mechanisms of the PX domains of NADPH oxidase p40phox and p47phox.	J Biol Chem	2003
11706040	Membrane targeting of C2 domains of phospholipase C-delta isoforms.	J Biol Chem	2002
12097325	Lateral sequestration of phosphatidylinositol 4,5-bisphosphate by the basic effector domain of myristoylated alanine-rich C kinase substrate is due to nonspecific electrostatic interactions.	J Biol Chem	2002

1 - 50 of 65

David R Slochower

Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California

Career Start Year 2010

Number of shared co-authors 0

Maofu Liao

Harvard Medical School

Career Start Year 2000

Number of shared co-authors 1

Judith Klein-Seetharaman

School of Molecular Sciences & College of Health Solutions, Arizona State University

Career Start Year 1999

Number of shared co-authors 2

Erik Verschueren

University of California San Francisco

Career Start Year 1997

Number of shared co-authors 3

Shira Albeck

Weizmann Institute of Science

Career Start Year 1996

Number of shared co-authors 11

Marc F Lensink

University Lille, CNRS

Career Start Year 1996

Number of shared co-authors 5

Huan-Xiang Zhou

University of Illinois Chicago

Career Start Year 1993

Number of shared co-authors 6

Emad Tajkhorshid

University of Illinois at Urbana-Champaign

Career Start Year 1993

Number of shared co-authors 7

Michael H B Stowell

University of Colorado Boulder

Career Start Year 1993

Number of shared co-authors 2

Diana R Tomchick

University of Texas Southwestern Medical Center

Career Start Year 1993

Number of shared co-authors 1

James J Chou

Harvard Medical School

Career Start Year 1993

Number of shared co-authors 2

Michael Overduin

University of Alberta

Career Start Year 1992

Number of shared co-authors 3

John E Ladbury

University of Leeds

Career Start Year 1992

Number of shared co-authors 2

Vadim A Klenchin

University of Wisconsin-Madison

Career Start Year 1991

Number of shared co-authors 1

Rebecca C Wade

Center for Molecular Biology (ZMBH), Heidelberg University

Career Start Year 1989

Number of shared co-authors 5

Andreas Hofmann

Heidelberg University

Career Start Year 1989

Number of shared co-authors 0

Paul A Bates

The Francis Crick Institute

Career Start Year 1989

Number of shared co-authors 5

Shankar Subramaniam

University of California

Career Start Year 1989

Number of shared co-authors 0

Miriam Eisenstein

Weizmann Institute of Science

Career Start Year 1988

Number of shared co-authors 5

Steven C Almo

Albert Einstein College of Medicine

Career Start Year 1988

Number of shared co-authors 13

Michael C Wiener

University of Virginia

Career Start Year 1986

Number of shared co-authors 2

Senyon Choe

Joint Center for Biosciences

Career Start Year 1986

Number of shared co-authors 1

David G Lambright

University of Massachusetts Medical School

Career Start Year 1985

Number of shared co-authors 1

Lawrence Shapiro

Zuckerman Mind Brain Behaviour Institute

Career Start Year 1982

Number of shared co-authors 7

John Kuriyan

University of California berkeley

Career Start Year 1982

Number of shared co-authors 4

Ruth Nussinov

Sackler School of Medicine, Tel Aviv University

Career Start Year 1980

Number of shared co-authors 8

Rohan D Teasdale

The University of Queensland

Career Start Year 1979

Number of shared co-authors 3

Charles L Brooks

University of Michigan ann arbor

Career Start Year 1974

Number of shared co-authors 4

Robert M Stroud

University of California San Francisco

Career Start Year 1965

Number of shared co-authors 4

Kai Simons

Germany Max Planck Institute of Molecular Cell Biology and Genetics

Career Start Year 1959

Number of shared co-authors 0

row(s) 1 - 30 of 30

Barry Honig

Columbia University Irving Medical Center

Co-authored papers 19

Gaetano T Montelione

Rensselaer Polytechnic Institute

Co-authored papers 5

Thomas B Acton

Center for Advanced Biotechnology and Medicine, The State University of New Jersey

Co-authored papers 4

Rong Xiao

School of Public Health, Capital Medical University

Co-authored papers 3

Nir Ben-Tal

Co-authored papers 3

Nebojsa Mirkovic

Weill Medical College of Cornell University

Co-authored papers 3

Michael A Kennedy

Miami University

Co-authored papers 2

Yuanpeng J Huang

Center for Advanced Biotechnology and Medicine, The State University of New Jersey

Co-authored papers 2

John R Cort

Pacific Northwest National Laboratory

Co-authored papers 2

Li-Chung Ma

Robert Wood Johnson Medical School, The State University of New Jersey

Co-authored papers 2

Andrea Califano

Columbia University

Co-authored papers 2

Andrej Sali (CM4AI)

University of California San Francisco

Co-authored papers 1

Torsten Schwede

University of Basel

Co-authored papers 1

Alexander Lachmann

Co-authored papers 1

Stephen K Burley

The State University of New Jersey

Co-authored papers 1

Andras Fiser

Albert Einstein College of Medicine

Co-authored papers 1

Ian A Wilson

The Scripps Research Institute, USA The Skaggs Institute for Chemical Biology

Co-authored papers 1

E Alejandro Sweet-Cordero

University of California San Francisco

Co-authored papers 1

Stanley R Krystek

Bristol-Myers Squibb Pharmaceutical Research Institute

Co-authored papers 1

Burkhard Rost

Technical University of Munich (TUM)

Co-authored papers 1

Michael J MacCoss

University of Washington

Co-authored papers 1

David Jones

The Francis Crick Institute

Co-authored papers 1

Steven E Brenner

University of California berkeley

Co-authored papers 1

Yang Shen

National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK)

Co-authored papers 1

Andrzej Joachimiak

Center for Structural Biology of Infectious Diseases, University of Chicago

Co-authored papers 1

Scott D Emr

Weill Institute for Cell and Molecular Biology, Cornell University

Co-authored papers 1

John Moult

Institute for Bioscience and Biotechnology Research

Co-authored papers 1

Peter K Jackson

Stanford University School of Medicine, Center for Clinical Sciences Research

Co-authored papers 1

Roland L Dunbrack

Fox Chase Cancer Center

Co-authored papers 1

Rhiju Das

Stanford University School of Medicine

Co-authored papers 1

1 - 30

Author Details

Column Actions

Recommended Authors

Collaborators